NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79989.1 Public Mus musculus 3 Nr1h5 23 108 98 CCDS HistoryNCBI Gene:381463Re-query CCDS DB by CCDS ID:79989.1Re-query CCDS DB by GeneID:381463See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196135.1 ENSMUSP00000143445.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196135.1Link to Ensembl Protein Viewer:ENSMUSP00000143445.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196135Re-query CCDS DB by Protein ID:ENSMUSP00000143445
Original member Current member NCBI NM_201622.2 NP_963916.2 Accepted alive Link to Nucleotide Sequence:NM_201622.2Link to Protein Sequence:NP_963916.2Re-query CCDS DB by Nucleotide ID:NM_201622Re-query CCDS DB by Protein ID:NP_963916Link to BLAST:NP_963916.2

Chromosomal Locations for CCDS 79989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102940870 102941117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102945247 102945360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102946034 102946156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102947751 102947864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102949043 102949142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102949288 102949392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102949481 102949623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102952171 102952311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102954696 102954887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102958320 102958383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGCAAATACCTATGTTGCTACGTCTGATGGGTACTACCTCGCTGAACCCACACAGTATTATGATATTT
TGCCAGAACAATTCCATTATCAGCTGTGTGATACAGATTTCCAAGAACCACCCTATTGTCAATATTCTAC
CGCTCAGTTTCCTCCAGCGTTACAGTCCCCATCTTTACAAAGTCATTTCAACACACATGGCTTGGATCCA
CAGTACAGTGGAGGCAGTTGGTGTGGACTCGACGCTCGAGAATCTGGCTTTTTCCGGCGTAGCATTACCA
AGAATGCAGTGTATTCTTGCAAGAACGGTGGTCACTGTGAAATGGACATGTACATGCGCAGAAAATGCCA
AGAGTGCAGACTGAAGAAGTGTAAGGCGGTGGGGATGTTGGCAGAATGTTTGCTCACAGAGATCCAGTGT
AAGTCGAAGAGACTTCGCAAGAACTTCAAGCACGGGCCTGCCCTGTACCCTGCCATCCAAGTGGAAGATG
AAGGAGCAGACACCAAACACGTGTCATCCAGCACCAGATCTGGGAAAGGGGTTCAGGACAACATGACTCT
AACTCAAGAGGAACATCGGCTTCTGAATACCATAGTGACTGTTCACCAAAAATCCATGATTCCCTTGGGA
GAAACAAGCAAACTTCTGCAGGAGGGTTCCAACCCCGAACTAAGTTTTCTGAGACTCTCAGAGGTATCAG
TCCTCCACATACAAGGGCTAATGAAGTTTACCAAGGGACTCCCAGGATTTGAAAATTTAACCACTGAGGA
TCAGGCTGCATTACAGAAGGCGTCAAAAACTGAAGTGATGTTCCTTCATGTAGCCCAGCTTTATGGTGGG
AAAGACTCAACCTCTGGAAGTACTATGAGACCAGCAAAGCCCTCAGCTGGGACACTAGAGGTGCATAATC
CTAGCGCTGATGAAAGTGTTCATTCTCCGGAAAACTTTCTCAAGGAAGGCTACCCTTCGGCTCCTCTAAC
TGATATTACTAAAGAATTTATTGCCTCACTATCTTACTTCTACAGAAGAATGAGTGAACTTCATGTATCG
GATACTGAATATGCTCTGCTTACGGCGACAACAGTGCTTTTCTCAGATCGTCCATGCCTTAAAAATAAGC
AGCATATAGAAAACCTACAAGAACCAGTCCTGCAACTTTTGTTTAAGTTTTCAAAAATGTACCATCCAGA
AGACCCACAGCATTTCGCCCACCTCATAGGGAGGCTTACTGAACTGAGAACTCTGAGTCACAGCCACTCT
GAAATCCTTCGCATGTGGAAAACAAAGGACCCCAGGTTGGTGATGTTATTCTCTGAGAAATGGGATCTGC
ACTCATTTTCCTGA

Translation (447 aa):
MANTYVATSDGYYLAEPTQYYDILPEQFHYQLCDTDFQEPPYCQYSTAQFPPALQSPSLQSHFNTHGLDP
QYSGGSWCGLDARESGFFRRSITKNAVYSCKNGGHCEMDMYMRRKCQECRLKKCKAVGMLAECLLTEIQC
KSKRLRKNFKHGPALYPAIQVEDEGADTKHVSSSTRSGKGVQDNMTLTQEEHRLLNTIVTVHQKSMIPLG
ETSKLLQEGSNPELSFLRLSEVSVLHIQGLMKFTKGLPGFENLTTEDQAALQKASKTEVMFLHVAQLYGG
KDSTSGSTMRPAKPSAGTLEVHNPSADESVHSPENFLKEGYPSAPLTDITKEFIASLSYFYRRMSELHVS
DTEYALLTATTVLFSDRPCLKNKQHIENLQEPVLQLLFKFSKMYHPEDPQHFAHLIGRLTELRTLSHSHS
EILRMWKTKDPRLVMLFSEKWDLHSFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH