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Report for CCDS79894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79894.1 Public Mus musculus 3 Pex5l 23 108 98 CCDS HistoryNCBI Gene:58869Re-query CCDS DB by CCDS ID:79894.1Re-query CCDS DB by GeneID:58869See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193681.5 ENSMUSP00000141454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193681.5Link to Ensembl Protein Viewer:ENSMUSP00000141454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193681Re-query CCDS DB by Protein ID:ENSMUSP00000141454
Original member Current member EBI ENSMUST00000193289.5 ENSMUSP00000142008.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193289.5Link to Ensembl Protein Viewer:ENSMUSP00000142008.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193289Re-query CCDS DB by Protein ID:ENSMUSP00000142008
Original member Current member EBI ENSMUST00000194016.5 ENSMUSP00000142196.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194016.5Link to Ensembl Protein Viewer:ENSMUSP00000142196.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194016Re-query CCDS DB by Protein ID:ENSMUSP00000142196
Original member Current member NCBI NM_001310460.1 NP_001297389.1 Accepted alive Link to Nucleotide Sequence:NM_001310460.1Link to Protein Sequence:NP_001297389.1Re-query CCDS DB by Nucleotide ID:NM_001310460Re-query CCDS DB by Protein ID:NP_001297389Link to BLAST:NP_001297389.1

Chromosomal Locations for CCDS 79894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32950669 32950873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32952471 32952628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32953036 32953201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32954328 32954525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32955762 32955832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32956673 32956816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32958746 32958862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32992906 32993001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33004304 33004400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33005920 33006043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33007122 33007316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33014965 33015076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33024696 33024800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33080465 33080536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33081976 33082068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGTCTGACAGTGAAATGGATGGAAGGACTCACATTCCATCTCTACTTAATGCCCTTTTGTCCAGAAATC
GGGTCATGCAGATGAGCTACTTGAAAAGTAAAGAACAAGGCTATGGCAAGCTAAGCAGTGACGAGGACCT
GGAAATAATTGTTGACCAGAAGCAGGGAAAAGGCTCTAGGGCTGCAGATAAGGCTGTTGCCATGGTGATG
AAGGAGATACCGAGGGAGGAGTCTGCAGAAGAAAAGCCCCTCCTTACTGTGACATCACAGCTGGTGAATG
AGCAACAAGAGAGCAGACCCCTCCTGAGCCCCTCCATCGACGACTTCCTCTGCGAAACCAAATCGGAGGC
CATTGCAAAGCCAGTGACATCCAACACAGCCGTGTTGACCACTGGCTTGGATCTCCTTGACCTGAGTGAA
CCCGTCTCTCAAACCCAAACCAAAGCCAAGAAATCTGAGCCCTCATCAAAGAGCTCGTCCCTCAAGAAGA
AAGCTGATGGCTCCGACCTCATCAGTGCAGATGCTGAGCAGAGAGCACAGGCTCTCCGAGGGCCAGAGAC
ATCATCCTTAGATTTAGACATTCAAACACAACTGGAAAAATGGGATGATGTCAAGTTTCACGGTGACCGA
ACAAGCAAGGGGCATCTCATGGCAGAAAGGAAATCATGCTCTTCCAGAACTGGGTCCAAAGAGCTTCTTT
GGTCCGCAGAACACAGATCTCAGCCAGAGCTGAGTACTGGGAAAAGCGCCCTCAACTCTGAGTCGGCTTC
CGAGTTGGAACTTGTAGCTCCAGCACAGGCTCGGCTGACCAAAGAGCATCGCTGGGGAAGTGCCCTGCTC
TCCAGGAACCATTCCTTGGAAGAGGAGTTTGAAAGGGCAAAAGCGGCAGTAGAGTCAGATACAGAGTTCT
GGGATAAGATGCAGGCAGAATGGGAGGAAATGGCCCGGAGGAACTGGATATCCGAGAACCAGGAAGCTCA
GAACCAAGTCACCGTCTCGGCCAGTGAGAAGGGATATTACTTCCACACTGAAAATCCCTTCAAGGACTGG
CCTGGAGCATTTGAAGAAGGCTTAAAAAGGTTGAAGGAAGGGGACCTGCCTGTCACCATCCTGTTCATGG
AAGCTGCAATTCTTCAGGACCCTGGAGACGCTGAGGCATGGCAGTTTCTTGGTATAACCCAGGCTGAGAA
TGAAAATGAGCAGGCAGCTATTGTCGCCCTCCAGAGGTGCCTGGAGTTGCAGCCCAACAACTTGAAGGCT
CTGATGGCCTTGGCTGTAAGTTACACCAACACCAGCCACCAGCAGGATGCTTGTGAGGCACTGAAGAACT
GGATTAAGCAAAACCCAAAGTACAAGTACCTTGTGAAGAACAAGAAAGGCTCTCCAGGCCTCACACGGCG
GATGTCTAAATCCCCAGTTGACAGCTCTGTTCTGGAAGGAGTGAAGGAGTTGTACCTGGAAGCTGCCCAC
CAAAATGGTGACATGATTGACCCAGACCTGCAGACAGGTCTGGGAGTTCTGTTCCACCTGAGTGGAGAGT
TCAATAGAGCAATCGATGCATTTAATGCTGCCTTAACAGTTCGGCCAGAGGATTACTCACTGTGGAACCG
TCTTGGGGCAACCTTGGCAAATGGAGACCGCAGTGAGGAAGCTGTGGAGGCCTACACGAGAGCACTGGAG
ATCCAGCCAGGTTTCATCCGCTCCAGATACAACCTGGGGATCAGCTGCATCAACCTGGGTGCCTACAGAG
AAGCGGTCAGCAACTTCCTCACTGCCCTCAGCTTGCAGAGGAAGAGCAGGAACCAGCAGCAAGTCCCTCA
CCCTGCCATCTCCGGGAACATCTGGGCCGCCCTCAGGATTGCCCTGTCGCTGATGGACCAGCCGGAGCTC
TTCCAGGCCGCCAACCTCGGTGACTTGGATGTCCTCCTGAGAGCTTTCAATTTGGATCCTTGA

Translation (650 aa):
MSDSEMDGRTHIPSLLNALLSRNRVMQMSYLKSKEQGYGKLSSDEDLEIIVDQKQGKGSRAADKAVAMVM
KEIPREESAEEKPLLTVTSQLVNEQQESRPLLSPSIDDFLCETKSEAIAKPVTSNTAVLTTGLDLLDLSE
PVSQTQTKAKKSEPSSKSSSLKKKADGSDLISADAEQRAQALRGPETSSLDLDIQTQLEKWDDVKFHGDR
TSKGHLMAERKSCSSRTGSKELLWSAEHRSQPELSTGKSALNSESASELELVAPAQARLTKEHRWGSALL
SRNHSLEEEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW
PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA
LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH
QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE
IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL
FQAANLGDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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