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Report for CCDS79893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79893.1 Public Mus musculus 3 Pex5l 23 108 98 CCDS HistoryNCBI Gene:58869Re-query CCDS DB by CCDS ID:79893.1Re-query CCDS DB by GeneID:58869See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108224.7 ENSMUSP00000103859.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108224.7Link to Ensembl Protein Viewer:ENSMUSP00000103859.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108224Re-query CCDS DB by Protein ID:ENSMUSP00000103859
Original member Current member NCBI NM_001289505.2 NP_001276434.1 Accepted alive Link to Nucleotide Sequence:NM_001289505.2Link to Protein Sequence:NP_001276434.1Re-query CCDS DB by Nucleotide ID:NM_001289505Re-query CCDS DB by Protein ID:NP_001276434Link to BLAST:NP_001276434.1

Chromosomal Locations for CCDS 79893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32950669 32950873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32952471 32952628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32953036 32953201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32954328 32954525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32955762 32955832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32956673 32956816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32958746 32958862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32992906 32993001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33004304 33004400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33005920 33006046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33007122 33007316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33014965 33015076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33080465 33080536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33081976 33081993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGCAGATGAGCTACTTGAAAAGTAAAGAACAAGGCTATGGCAAGCTAAGCAGTGACGAGGACCTGGAAA
TAATTGTTGACCAGAAGCAGCTGGTGAATGAGCAACAAGAGAGCAGACCCCTCCTGAGCCCCTCCATCGA
CGACTTCCTCTGCGAAACCAAATCGGAGGCCATTGCAAAGCCAGTGACATCCAACACAGCCGTGTTGACC
ACTGGCTTGGATCTCCTTGACCTGAGTGAACCCGTCTCTCAAACCCAAACCAAAGCCAAGAAATCTGAGC
CCTCATCAAAGAGCTCGTCCCTCAAGAAGAAAGCTGATGGCTCCGACCTCATCAGTGCAGATGCTGAGCA
GAGAGCACAGGCTCTCCGAGGGCCAGAGACATCATCCTTAGATTTAGTAGACATTCAAACACAACTGGAA
AAATGGGATGATGTCAAGTTTCACGGTGACCGAACAAGCAAGGGGCATCTCATGGCAGAAAGGAAATCAT
GCTCTTCCAGAACTGGGTCCAAAGAGCTTCTTTGGTCCGCAGAACACAGATCTCAGCCAGAGCTGAGTAC
TGGGAAAAGCGCCCTCAACTCTGAGTCGGCTTCCGAGTTGGAACTTGTAGCTCCAGCACAGGCTCGGCTG
ACCAAAGAGCATCGCTGGGGAAGTGCCCTGCTCTCCAGGAACCATTCCTTGGAAGAGGAGTTTGAAAGGG
CAAAAGCGGCAGTAGAGTCAGATACAGAGTTCTGGGATAAGATGCAGGCAGAATGGGAGGAAATGGCCCG
GAGGAACTGGATATCCGAGAACCAGGAAGCTCAGAACCAAGTCACCGTCTCGGCCAGTGAGAAGGGATAT
TACTTCCACACTGAAAATCCCTTCAAGGACTGGCCTGGAGCATTTGAAGAAGGCTTAAAAAGGTTGAAGG
AAGGGGACCTGCCTGTCACCATCCTGTTCATGGAAGCTGCAATTCTTCAGGACCCTGGAGACGCTGAGGC
ATGGCAGTTTCTTGGTATAACCCAGGCTGAGAATGAAAATGAGCAGGCAGCTATTGTCGCCCTCCAGAGG
TGCCTGGAGTTGCAGCCCAACAACTTGAAGGCTCTGATGGCCTTGGCTGTAAGTTACACCAACACCAGCC
ACCAGCAGGATGCTTGTGAGGCACTGAAGAACTGGATTAAGCAAAACCCAAAGTACAAGTACCTTGTGAA
GAACAAGAAAGGCTCTCCAGGCCTCACACGGCGGATGTCTAAATCCCCAGTTGACAGCTCTGTTCTGGAA
GGAGTGAAGGAGTTGTACCTGGAAGCTGCCCACCAAAATGGTGACATGATTGACCCAGACCTGCAGACAG
GTCTGGGAGTTCTGTTCCACCTGAGTGGAGAGTTCAATAGAGCAATCGATGCATTTAATGCTGCCTTAAC
AGTTCGGCCAGAGGATTACTCACTGTGGAACCGTCTTGGGGCAACCTTGGCAAATGGAGACCGCAGTGAG
GAAGCTGTGGAGGCCTACACGAGAGCACTGGAGATCCAGCCAGGTTTCATCCGCTCCAGATACAACCTGG
GGATCAGCTGCATCAACCTGGGTGCCTACAGAGAAGCGGTCAGCAACTTCCTCACTGCCCTCAGCTTGCA
GAGGAAGAGCAGGAACCAGCAGCAAGTCCCTCACCCTGCCATCTCCGGGAACATCTGGGCCGCCCTCAGG
ATTGCCCTGTCGCTGATGGACCAGCCGGAGCTCTTCCAGGCCGCCAACCTCGGTGACTTGGATGTCCTCC
TGAGAGCTTTCAATTTGGATCCTTGA

Translation (591 aa):
MQMSYLKSKEQGYGKLSSDEDLEIIVDQKQLVNEQQESRPLLSPSIDDFLCETKSEAIAKPVTSNTAVLT
TGLDLLDLSEPVSQTQTKAKKSEPSSKSSSLKKKADGSDLISADAEQRAQALRGPETSSLDLVDIQTQLE
KWDDVKFHGDRTSKGHLMAERKSCSSRTGSKELLWSAEHRSQPELSTGKSALNSESASELELVAPAQARL
TKEHRWGSALLSRNHSLEEEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGY
YFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR
CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE
GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE
EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR
IALSLMDQPELFQAANLGDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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