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Report for CCDS79810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79810.1 Public Mus musculus 2 Ppp1r1c 23 108 98 CCDS HistoryNCBI Gene:75276Re-query CCDS DB by CCDS ID:79810.1Re-query CCDS DB by GeneID:75276See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040863.10 ENSMUSP00000042784.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040863.10Link to Ensembl Protein Viewer:ENSMUSP00000042784.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040863Re-query CCDS DB by Protein ID:ENSMUSP00000042784
Original member Current member NCBI NM_001290744.1 NP_001277673.1 Accepted alive Link to Nucleotide Sequence:NM_001290744.1Link to Protein Sequence:NP_001277673.1Re-query CCDS DB by Nucleotide ID:NM_001290744Re-query CCDS DB by Protein ID:NP_001277673Link to BLAST:NP_001277673.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277673.1 76 Q8BKK4-2 76 100% 0 0

Chromosomal Locations for CCDS 79810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79708174 79708254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79709899 79709959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79808302 79808390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (231 nt):
ATGGAGCCCAATAGCCCCAAAAAGATACAATTTGCTGTGCCTTTATTCCAGAGTCAGATTGCCCCAGAGG
CAGCAGAGCAGATCAGGAAAAGAAGACCTACACCAGCATCCCTTGTGATTCTCAATGAACATAATTCCCC
AGGCGTTAAGCATCTGAAAGACCAGAATGGATCAGCGTTCCCGGAAGAAGAAGAAAGTGCAAGTGAAAGA
GAAGAGAAGTGGAACCATTAA

Translation (76 aa):
MEPNSPKKIQFAVPLFQSQIAPEAAEQIRKRRPTPASLVILNEHNSPGVKHLKDQNGSAFPEEEESASER
EEKWNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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