CCDS Report for Consensus CDS

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Report for CCDS79642.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
79642.1	Public	Mus musculus	18	Sema6a	23	108	98

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79642.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000076043.12	ENSMUSP00000075420.6	Accepted	alive
		NCBI	NM_001311097.1	NP_001298026.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001298026.1	976	O35464-3	976	100%	0	0

Chromosomal Locations for CCDS 79642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)

Genome Browser links:

Chromosome	Start	Stop
18	47248383	47249584
18	47276586	47276606
18	47279116	47279174
18	47281120	47281200
18	47281292	47281432
18	47281795	47281971
18	47283309	47283464
18	47287423	47287554
18	47289976	47290193
18	47291096	47291184
18	47291888	47292007
18	47294020	47294110
18	47298186	47298287
18	47299077	47299139
18	47300084	47300144
18	47304104	47304221
18	47306356	47306455

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2931 nt):
ATGCGGCCAGCAGCCTTACTGCTGTGTCTCACACTGCTACACTGCGCTGGGGCTGGTTTCCCAGAAGATT CCGAGCCAATCAGTATTTCGCATGGCAACTATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGG ACGGAACACCACGCAGAGGCACAGGCTGGACATCCAGATGATCATGATCATGAACAGAACCCTCTACGTT GCTGCTCGAGACCATATTTATACTGTTGATATAGACACATCCCACACAGAAGAAATTTACTGTAGCAAAA AACTGACATGGAAATCTAGACAGGCTGACGTAGACACATGCAGGATGAAGGGGAAACATAAGGATGAATG TCACAACTTCATTAAAGTTCTTCTCAAGAAGAATGATGATACGCTGTTTGTCTGTGGAACCAATGCCTTC AACCCTTCCTGCAGAAACTACAGGGTCGATACCTTGGAAACTTTTGGGGATGAATTTAGCGGAATGGCCA GATGCCCTTATGATGCCAAACATGCCAACATCGCTCTGTTTGCAGATGGAAAACTCTACTCGGCTACAGT GACTGACTTTCTGGCCATTGATGCAGTCATTTACAGGAGCCTCGGAGACAGCCCTACCCTCAGGACTGTC AAGCATGATTCAAAGTGGTTGAAAGAGCCGTACTTTGTCCAAGCCGTGGATTATGGGGACTATATCTACT TCTTCTTCAGAGAAATTGCAGTAGAATACAACACTATGGGGAAGGTTGTTTTCCCTAGGGTGGCTCAGGT CTGTAAGAATGACATGGGAGGGTCTCAGAGAGTCCTGGAGAAGCAGTGGACATCTTTCCTGAAGGCTCGC CTGAACTGCTCGGTGCCTGGAGACTCTCATTTTTATTTCAATATACTCCAGGCAGTTACAGATGTGATTC GCATTAATGGCCGTGATGTTGTCTTGGCAACCTTTTCCACACCTTATAACAGCATCCCAGGTTCTGCAGT CTGTGCCTATGACATGCTTGACATTGCTAATGTTTTCACTGGGAGGTTCAAGGAACAGAAATCACCTGAC TCTACCTGGACACCCGTTCCAGACGAACGAGTCCCTAAGCCCAGGCCAGGCTGTTGTGCTGGATCATCCT CTTTAGAAAAATATGCAACCTCCAATGAGTTTCCCGATGATACCCTGAACTTCATTAAGACGCATCCACT CATGGACGAGGCAGTGCCTTCCATCATCAACAGACCTTGGTTCCTGAGAACAATGGTCAGATACCGCCTG ACCAAAATTGCAGTAGACAACGCTGCCGGGCCATATCAGAATCACACTGTGGTTTTCCTGGGATCAGAAA AGGGAATCATCCTGAAGTTCTTGGCCAGGATAGGAAGCAGTGGTTTCCTAAATGGCAGCCTTTTCCTGGA GGAGATGAATGTTTACAACCCAGAAAAGTGCAGCTATGATGGTGTAGAAGACAAAAGGATCATGGGCATG CAGCTCGACAGAGCGAGTGGCTCACTCTATGTTGCATTCTCTACTTGTGTGATCAAGGTGCCTCTTGGCC GCTGTGAGCGACATGGGAAGTGTAAAAAAACCTGCATCGCCTCCAGAGACCCGTATTGTGGGTGGGTAAG GGAAAGTGGTTCCTGTGCCCATCTGTCACCCCTTAGCAGACTGACATTTGAGCAGGACATTGAGCGTGGC AATACGGACGGCCTAGGAGACTGTCACAATTCCTTCGTGGCACTGAATGGAGTGATTCGGGAAAGTTACC TCAAAAGCAACGACCAGCTTGTTCCTGTCACCCTCCTGGCCATTGCAGTCATTCTGGCTTTTGTCATGGG GGCCGTCTTCTCGGGCATCATCGTGTATTGTGTGTGCGATCACCGGCGCAAAGACGTGGCAGTAGTGCAG CGCAAGGAGAAAGAGCTCACTCACTCGCGTCGGGGATCTATGAGCAGTGTCACCAAGCTCAGTGGCCTCT TTGGGGACACCCAGTCCAAGGACCCAAAGCCTGAGGCCATCCTCACACCACTCATGCACAACGGCAAGCT GGCCACGCCTAGCAACACCGCCAAGATGCTCATCAAGGCTGACCAGCATCACCTAGACCTCACCGCCCTG CCCACCCCAGAGTCCACCCCGACACTGCAGCAGAAACGGAAACCCAACCGCGGCAGTCGCGAGTGGGAGA GGAACCAGAACATCATCAATGCCTGCACCAAGGACATGCCTCCCATGGGTTCCCCTGTGATTCCCACGGA CCTGCCCCTCCGGGCCTCCCCAAGCCACATCCCCAGCGTGGTGGTCCTGCCCATCACGCAGCAGGGCTAC CAGCACGAGTACGTAGATCAGCCCAAAATGAGCGAGGTGGTGGCTCAGATGGCACTGGAGGACCAGGCTG CCACCCTGGAGTATAAGACCATCAAAGAGCACCTGAGTAGCAAGAGTCCCAACCATGGGGTGAACCTTGT GGAGAACCTGGACAGCCTGCCCCCTAAAGTTCCACAGCGCGAGGCCTCCCTAGGTCCCCCGGGAACCTCA CTGTCACAGACCGGCCTGAGCAAGAGGCTGGAGATGCAACACTCCTCCTCCTATGGGCTCGAATATAAGA GGAGCTACCCCACGAACTCGCTCACAAGAAGCCACCAGACCACCACTCTCAAAAGAAACAATACTAACTC CTCCAATTCCTCCCACCTCTCCAGGAACCAGAGCTTTGGCCGGGGAGACAACCCACCCCCCGCCCCGCAG CGGGTGGACTCTATCCAGGTGCACAGCTCCCAGCCCTCTGGCCAGGCCGTGACTGTTTCGAGGCAGCCCA GCCTCAATGCCTACAACTCACTGACGAGGTCGGGGCTGAAGCGCACCCCCTCGCTAAAGCCAGATGTACC CCCCAAACCTTCCTTTGCTCCCCTTTCCACATCCATGAAGCCCAATGATGCATGTACATAA
Translation (976 aa):
MRPAALLLCLTLLHCAGAGFPEDSEPISISHGNYTKQYPVFVGHKPGRNTTQRHRLDIQMIMIMNRTLYV AARDHIYTVDIDTSHTEEIYCSKKLTWKSRQADVDTCRMKGKHKDECHNFIKVLLKKNDDTLFVCGTNAF NPSCRNYRVDTLETFGDEFSGMARCPYDAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDSPTLRTV KHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKAR LNCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANVFTGRFKEQKSPD STWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIINRPWFLRTMVRYRL TKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGM QLDRASGSLYVAFSTCVIKVPLGRCERHGKCKKTCIASRDPYCGWVRESGSCAHLSPLSRLTFEQDIERG NTDGLGDCHNSFVALNGVIRESYLKSNDQLVPVTLLAIAVILAFVMGAVFSGIIVYCVCDHRRKDVAVVQ RKEKELTHSRRGSMSSVTKLSGLFGDTQSKDPKPEAILTPLMHNGKLATPSNTAKMLIKADQHHLDLTAL PTPESTPTLQQKRKPNRGSREWERNQNIINACTKDMPPMGSPVIPTDLPLRASPSHIPSVVVLPITQQGY QHEYVDQPKMSEVVAQMALEDQAATLEYKTIKEHLSSKSPNHGVNLVENLDSLPPKVPQREASLGPPGTS LSQTGLSKRLEMQHSSSYGLEYKRSYPTNSLTRSHQTTTLKRNNTNSSNSSHLSRNQSFGRGDNPPPAPQ RVDSIQVHSSQPSGQAVTVSRQPSLNAYNSLTRSGLKRTPSLKPDVPPKPSFAPLSTSMKPNDACT

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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