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Report for CCDS79640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79640.1 Public Mus musculus 18 Scgb3a2 23 108 98 CCDS HistoryNCBI Gene:117158Re-query CCDS DB by CCDS ID:79640.1Re-query CCDS DB by GeneID:117158See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187157.6 ENSMUSP00000140476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187157.6Link to Ensembl Protein Viewer:ENSMUSP00000140476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187157Re-query CCDS DB by Protein ID:ENSMUSP00000140476
Original member Current member NCBI NM_001289644.1 NP_001276573.1 Accepted alive Link to Nucleotide Sequence:NM_001289644.1Link to Protein Sequence:NP_001276573.1Re-query CCDS DB by Nucleotide ID:NM_001289644Re-query CCDS DB by Protein ID:NP_001276573Link to BLAST:NP_001276573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276573.1 91 Q920H1-2 91 100% 0 0

Chromosomal Locations for CCDS 79640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 43764418 43764472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43766704 43766900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43767231 43767254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGAAGCTGGTATCTATCTTTCTGCTGGTGACCATTGGTATTTGTGGTTATTCTGCCACTGCCCTTCTCA
TCAACCGTCTCCCTGTTGTTGACAAATTACCTGTACCTTTGGACGACATTATTCCCTCATTTGATCCCTT
GAAGATGCTTCTGAAAACCCTGGGCATTTCTGTAGAACATCTGGTGACAGGACTGAAGAAGTGTGTGGAC
GAGCTGGGACCAGAGGCTTCCGAGGCCGTGAAGAAGCTTCTGGAGGCTCTTTCACACCTGGTATAA

Translation (91 aa):
MKLVSIFLLVTIGICGYSATALLINRLPVVDKLPVPLDDIIPSFDPLKMLLKTLGISVEHLVTGLKKCVD
ELGPEASEAVKKLLEALSHLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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