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Report for CCDS79633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79633.1 Public Mus musculus 18 Pcdhgb7 23 108 98 CCDS HistoryNCBI Gene:93704Re-query CCDS DB by CCDS ID:79633.1Re-query CCDS DB by GeneID:93704See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194928.1 ENSMUSP00000141997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194928.1Link to Ensembl Protein Viewer:ENSMUSP00000141997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194928Re-query CCDS DB by Protein ID:ENSMUSP00000141997
Original member Current member NCBI NM_033579.2 NP_291057.1 Accepted alive Link to Nucleotide Sequence:NM_033579.2Link to Protein Sequence:NP_291057.1Re-query CCDS DB by Nucleotide ID:NM_033579Re-query CCDS DB by Protein ID:NP_291057Link to BLAST:NP_291057.1

Chromosomal Locations for CCDS 79633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37751779 37754193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGGAGGGAGCAGCGCGCGGAGGAAGCGCCCCGGCCGCCCGCAGGTACTGTTTATCCTGCTGCTGCCTT
TGTTCTGTCCCGCGCTGGGCCAGCCGGTCCGCTACTCCATCCCTGAGGAGCTGGACCGCGGGTCGGTGGT
GGGGAAGCTCGCCAAGGACCTGGGGCTCAGTGTCCTGGAAGTGTCGGCTCGGAAGCTGCGGGTCAGCGCT
GAGAAGCTGCACTTCAGCGTGGATTCGGAGAGCGGGGACTTACTGGTGAAGGACCGCATAGATCGCGAGC
AAATATGCAAAGGGAGGAGAAAGTGTGAGCTGCAGTTGGAAGCTGTGCTAGAAAACCCTTTAAATATTTT
TCATGTCGTTGTGGAGATTGAGGATGTTAATGATCACGCTCCTCAATTTCCAAAAGACGAAATAAACCTA
GAGATAAGTGAATCCGACAGCCCAGGGGCGAGAACAATTCTGGAGTCAGCAAAAGATCTTGACATTGGTA
TGAATTCTCTAAGTAAATACCAGTTAAGTCCTAACGACTACTTTTTATTGTTGGTGAAAGACAATCCTGA
TGGTAGTAAATACCCAGAATTAGAATTGCAAAAGATGCTGGACCGAGAAGCAGAGAGCACACACCACCTG
ATGCTGACTGCTGTAGATGGTGGGGACCCGCCCCGTACTGGTACTACTCAGCTCCGAATCCGAGTGGTGG
ACGCCAATGATAACCGCCCAGTGTTCAGCCAAGACGTGTACAGAGTCCGCCTTCCAGAAGACTTGCCTCC
AGGAACCACAGTCCTAAGGCTAAAGGCAATGGATCAAGACGAGGGCATCAATGCAGAATTTACATATTCC
TTCCTAGGTGTGGCTAACAAAGCCCAGTTCTCTCTGGATCCCATAACAGGAGATATTGTAACTCGCCAGT
CGTTGGATTTTGAAGAAGTAGAGCAATATACGATTGATGTGGAGGCAAAGGACCGAGGATCTCTTTCTTC
ACAGTGTAAAGTAATTATAGAGGTTCTAGATGAGAACGACAACCGCCCAGAAATAATCATCACTTCTCTC
TCTGATCAGATTTCGGAGGATTCTCCTTCCGGAACTGTTGTGGCCCTCTTCAAGGTACGGGATCGAGATT
CTGGGGAAAACGCAGAAGTCATGTGCAGTTTAAGCGGAAACAATCCATTTAAGATTCATTCTTCTTCCAA
CAATTACTACAAGTTAGTAACAGATAGCATCCTAGACCGGGAACAGACCCCAGGGTACAACGTTACTATC
ACAGCCACTGATAGGGGCAAGCCGCCCCTTTCCTCCAGCACAACCATCACTCTGAACGTCGCTGATGTCA
ACGACAATGCACCTGTTTTCCAACAGCAGGCCTACCTGATAAACGTAGCAGAAAACAACCAGCCCGGTAC
CTCCATAACCCAAGTCAAAGCATGGGATCCAGATGTGGGATCCAATGGCCTCGTCTCCTACTCCATCATA
GCCAGCGACCTAGAACCAAAAGCGCTGTCGTCCTTCGTGTCCGTGAACCAGGACAGTGGAGTAGTGTACG
CGCAGCGTGCCTTTGACCATGAGCAGATTCGCTCCTTCCAGCTGACTTTACAAGCGCGAGACCAGGGGTC
GCCTGCGCTCAGCGCCAACGTGAGCATGCGCGTGCTGGTGGACGACCGCAACGACAACGCGCCACGCGTG
CTGTATCCCACGCTGGAGCCCGATGGCTCTGCACTCTTCGACATGGTACCCCGTGCCGCTGAGCCTGGAT
ACCTGGTCACCAAAGTGGTGGCTGTGGATGCAGACTCAGGACACAATGCCTGGCTGTCTTACCACGTGCT
GCAGGCCAGCGATCCCGGTCTCTTCAGCCTGGGGCTGCGCACGGGCGAGGTGCGCACAGCGCGTGCCTTG
AGCGACAAGGATGCAGCTCGTCAGCGCCTTCTGGTCGCTGTGCGTGATGGTGGACAGCCACCTCTGTCTG
CCACTGCTACACTGCTCCTAGTTTTTGCAGACAGCCTACAAGAAGCGTTGCCAGACCTCGTCGATCATCC
CATCCCCTCCGACCCTCAGAGTGAGCTTCAGTTTTACCTGGTGGTGGCTTTGGCCTTGATCTCAGTGCTT
TTCCTTCTCGCAGTAATTTTCGCCATTGCTTTGCGCCTGCGACAGTCTTCCAGCCCTTCATCCACTGGTT
GCTTTGGGTCGGTTCTTGGTTCCAAATCTAGACCAGTACTTCCACCCAACTACAGCGAGGGAACATTGCC
CTATGCCTATAATCTGTGCGTGCCGGGAGATCAACTTAAACCAGAATTTAATTACTTCTCATCCGTTGGA
GATTGTCCAGCCGCACAAGATATTCTCAACAAAGATAGCTCCTCGGCACTGTTGGCTAGTATTTTAACTC
CTGGTGTTGAAGCAGACGAGAAGACCTTTAACCAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCA
AGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCCAACAACCAGTTT
GATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCTCTACCCTGG
GAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCACGTGCCTGA
CTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGC
AAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (929 aa):
MGGSSARRKRPGRPQVLFILLLPLFCPALGQPVRYSIPEELDRGSVVGKLAKDLGLSVLEVSARKLRVSA
EKLHFSVDSESGDLLVKDRIDREQICKGRRKCELQLEAVLENPLNIFHVVVEIEDVNDHAPQFPKDEINL
EISESDSPGARTILESAKDLDIGMNSLSKYQLSPNDYFLLLVKDNPDGSKYPELELQKMLDREAESTHHL
MLTAVDGGDPPRTGTTQLRIRVVDANDNRPVFSQDVYRVRLPEDLPPGTTVLRLKAMDQDEGINAEFTYS
FLGVANKAQFSLDPITGDIVTRQSLDFEEVEQYTIDVEAKDRGSLSSQCKVIIEVLDENDNRPEIIITSL
SDQISEDSPSGTVVALFKVRDRDSGENAEVMCSLSGNNPFKIHSSSNNYYKLVTDSILDREQTPGYNVTI
TATDRGKPPLSSSTTITLNVADVNDNAPVFQQQAYLINVAENNQPGTSITQVKAWDPDVGSNGLVSYSII
ASDLEPKALSSFVSVNQDSGVVYAQRAFDHEQIRSFQLTLQARDQGSPALSANVSMRVLVDDRNDNAPRV
LYPTLEPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARAL
SDKDAARQRLLVAVRDGGQPPLSATATLLLVFADSLQEALPDLVDHPIPSDPQSELQFYLVVALALISVL
FLLAVIFAIALRLRQSSSPSSTGCFGSVLGSKSRPVLPPNYSEGTLPYAYNLCVPGDQLKPEFNYFSSVG
DCPAAQDILNKDSSSALLASILTPGVEADEKTFNQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQF
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
KAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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