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Report for CCDS79617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79617.1 Public Mus musculus 18 Pcdha5 23 108 98 CCDS HistoryNCBI Gene:12941Re-query CCDS DB by CCDS ID:79617.1Re-query CCDS DB by GeneID:12941See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192168.1 ENSMUSP00000142293.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192168.1Link to Ensembl Protein Viewer:ENSMUSP00000142293.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192168Re-query CCDS DB by Protein ID:ENSMUSP00000142293
Original member Current member NCBI NM_009959.2 NP_034089.1 Accepted alive Link to Nucleotide Sequence:NM_009959.2Link to Protein Sequence:NP_034089.1Re-query CCDS DB by Nucleotide ID:NM_009959Re-query CCDS DB by Protein ID:NP_034089Link to BLAST:NP_034089.1

Chromosomal Locations for CCDS 79617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36960440 36962785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGGTATATTTCCAGCGAGGAAGTCCGGGATTTCGGCGCCTGCTGATCTCCTTTGTGCTTCTCGCAGCCT
GGGAGGCAGGGAGCGGCCAGCTCCACTACTCCATCCCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCCTGTTCAGAGTGGCGTCCAAGGAC
CGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG
AGCTGTGTGGGCGGAGCGCGGAGTGTAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCACGTGGAGGTGGAGGTGAAGGACATTAACGACAACCCGCCTAAATTCTCACGACCTGAACAAAGATTA
TTTATTTTAGAGTCAAGAATGCCAGACTCGCGGTTTCCGGTAGAGGGCGCATCTGATTTGGATATAGGAG
CCAATGCAGCCTTGAGTTATAAGATAAATCCTAATGAATATTTTGACTTGGATGTTAAAAGAAACGAAGA
AGAAACAAGCGTTTTACAACTAGTTTTGAAGAAGCCCCTAGATAGAGAAGAAACCCAAGAGCATCGTTTG
TTGCTCATTGCAATTGATGGAGGGAAACCTGAACTAACAGGTACTGTTCAGTTACTGATTGATGTGTTGG
ATGCAAATGATAATGCTCCGGAGTTTGATAAATCTATTTATAATGTTAGATTGTTAGAAAATACACCCAA
CGGGACATTAGTCATTAAACTCAATGCTTCAGATGCGGATGAGGGAATTAATAAAGAAATACTGTATTTC
TTTAGTAATCTTGTTCTTGACGATGTAAAATCTAAATTTACGATAGATTCTTCCAGTGGAGAAATAAAAG
TTAAGGGCGAACTGGATTACGAAGACTGTAAAGTATATGAAATTAATATTGATGCAGTGGACAGAAGCGC
ATTCCCACTAGCAGGACACTGCAAAATTATAGTGAAACTAGTGGATGTAAATGATAACGTGCCTGAGATG
GCCATAACCTCCATTTTTTTGCCTATCAAAGAGGATGCTCCATTGGCGACTGTCATCGCTCTGATTAGCG
TGTCAGATCGTGACTCAGGCGCCAATGGGCAGGTGACCTGCTCCTTGACACCCCACATCCCCTTCAAGCT
GGTGTCCACTTTCAAGAATTACTATTCGCTTGTACTGGACAGAGCTCTGGACCGAGAGACTATCGCTAAC
TACGACGTTGTTGTGACCGCTCGCGATGGAGGCTCGCCCTCCTTGTGGGCCACGGCCAGCGTGTCCGTGG
AGGTGGCTGACGTGAACGACAACGTGCCTGCGTTTGCGCAGCCCGAATACACTGTGTTCGTGAAGGAGAA
CAACCCGCCTGGTGCGCACATCTTCACGGTGTCAGCGATGGACGCTGATGCACAGGAGAACGCGCTGGTG
TCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTCTGTGCACGCGGAGA
GCGGCAAGGTGTTTGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGC
GCGGGATGCTGGTGTGCCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGTTTGTGCTGGATGAGAACGAC
AACGCACCCACGCTGCTGGGGCCTCAGGGTAGCGGAGGAACTATTGAGTTGTTGTCCAGGTCAGTGAGTT
CTGGCCATGTGGTTGCGAAGGTGCGTGCAGTGGACGCGGATTCTGGCTACAACGCGTGGCTGTCTTATGA
GTTGCAGCCTGCGACAGGTGCTGTGCGCAGCCCGTTCCGCGTGGGGCTATACACTGGTGAGATCAGCACA
ACTCGTGTTCTGGATGAAGCGGACATGCCGCGTCAACGCTTGTTGGTGCTGGTGAAGGATCACGGCGAGC
CACCTCTGACAGCCACGGCCACTTTCCTGGTGTCTCTTGTGGAGAACAGCCAGACCCCGAAGGTCTCATC
CAGGGTGTTGGTTGGAACCTCTGGTTCAGACTCCACGCTGATAGATGTCAACGTGTACCTAATCATCGCC
ATTTGTGCGGTTTCCAGTCTGTTGGTGCTCACCCTGCTTCTGTACACAGCGATTCGCTGCTCAGCGACGC
CCACTGATGGAGCCTGTGCTCCAGGAAAGCCAGTGCTGGTGTGCTCCAGCGCGGTAGGGACCTGGTCATA
CTCGCAGCAGAGGCGACAGAGGGTGTGCTCTGGAGAAGGTCCACCCAAGACCGACCTCATGGCCTTCAGT
CCCAGCCTACCTCAGGGACCCAGCTCTACAGAGAATCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTG
CCTCGCTAAGAGCAGGCATGCACAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGG
AGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCT
CCGGTGGGCGCCGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCG
GTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCC
TGCTAACAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAG
AAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACC
AGTGA

Translation (934 aa):
MVYFQRGSPGFRRLLISFVLLAAWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKD
RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNPPKFSRPEQRL
FILESRMPDSRFPVEGASDLDIGANAALSYKINPNEYFDLDVKRNEEETSVLQLVLKKPLDREETQEHRL
LLIAIDGGKPELTGTVQLLIDVLDANDNAPEFDKSIYNVRLLENTPNGTLVIKLNASDADEGINKEILYF
FSNLVLDDVKSKFTIDSSSGEIKVKGELDYEDCKVYEINIDAVDRSAFPLAGHCKIIVKLVDVNDNVPEM
AITSIFLPIKEDAPLATVIALISVSDRDSGANGQVTCSLTPHIPFKLVSTFKNYYSLVLDRALDRETIAN
YDVVVTARDGGSPSLWATASVSVEVADVNDNVPAFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENALV
SYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDEND
NAPTLLGPQGSGGTIELLSRSVSSGHVVAKVRAVDADSGYNAWLSYELQPATGAVRSPFRVGLYTGEIST
TRVLDEADMPRQRLLVLVKDHGEPPLTATATFLVSLVENSQTPKVSSRVLVGTSGSDSTLIDVNVYLIIA
ICAVSSLLVLTLLLYTAIRCSATPTDGACAPGKPVLVCSSAVGTWSYSQQRRQRVCSGEGPPKTDLMAFS
PSLPQGPSSTENPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP
PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSDFITFGKKEETKKKK
KKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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