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Report for CCDS79450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79450.1 Public Mus musculus 16 Lrch3 23 108 98 CCDS HistoryNCBI Gene:70144Re-query CCDS DB by CCDS ID:79450.1Re-query CCDS DB by GeneID:70144See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170201.7 ENSMUSP00000126964.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170201.7Link to Ensembl Protein Viewer:ENSMUSP00000126964.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170201Re-query CCDS DB by Protein ID:ENSMUSP00000126964
Original member Current member NCBI NM_001310672.1 NP_001297601.1 Accepted alive Link to Nucleotide Sequence:NM_001310672.1Link to Protein Sequence:NP_001297601.1Re-query CCDS DB by Nucleotide ID:NM_001310672Re-query CCDS DB by Protein ID:NP_001297601Link to BLAST:NP_001297601.1

Chromosomal Locations for CCDS 79450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32914142 32914403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32950292 32950436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32952057 32952183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32955300 32955405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32959395 32959531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32961635 32961744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32973880 32973973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32975729 32975849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32979396 32979544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32981828 32981904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32985976 32986027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32986739 32986888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32988431 32988481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32990265 32990318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32993762 32993833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32994948 32994996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32997382 32997488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32998504 32998641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33005664 33005741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33012341 33012490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGGCGGCCGCGGGCTTGGTGGCTGTGGTAGCGGCTGCGGAGTACTCTGGCCCTGTGGCGTCCGGGGGAA
ACCTCTCCGGTGCGACCTGTGGGCCGAGCCCTGGGTTGGGCCCTGGTCCTGGCCCGGGCTCTTGGAGCCG
CTCGGTCGACCGAGCCCTGGAAGAGGCGGCGGTCACCGGGGTGCTGAGCCTGAGCGGCCGGAAACTGAGG
GAGTTTCCCCGGGGAGCGGCCAACCATGACCTGACGGACACCACCCGGGCCGACCTGTCACGAAATCGCC
TCTCAGAAATCCCTATGGAAGCATGTCACTTTGTTTCCCTGGAAAGTCTTAACCTATACCAGAATTGTAT
TCGGTATATCCCAGAGGCTGTTCTAAACTTACAAGCTCTGACATTCCTAAATATTAGTCGGAATCAACTG
TCAACATTGCCAGTCCACTTGTGTAACTTACCACTGAAAGTCTTAATCGCTAGCAATAACAAATTGGTCT
CGCTTCCTGAAGAAATTGGACATCTCAGACATTTGACAGAACTTGATGTAAGCTGCAATGAAATTCAAAC
TGTGCCTTCCCAAATTGGTAATCTGGAAGCCTTGAGAGACTTCAATGTAAGAAGAAATCATCTTCTACGC
TTGCCTGAAGAGCTGGCAGAGGTGCCTTTGATACGGCTCGACTTCTCGTGCAATAAAATCACAGTGATCC
CTGTTTGTTACCGGAACCTCCGGCACCTCCAGGTGATCACCTTGGACAACAACCCGCTTCAGTCGCCTCC
TGCACAGATATGTATAAAAGGCAAAATCCACATATTTAAATACCTGAACATACAAGCTTGTAAGATTGCT
CCAGATCTGCCAGATTATGAACGGAGGCCCTTGGGATTTGGATCCTGCCATGAAGAACTGTACTCAGGCC
GTCCTTACGGAGCCCTGGATTCAGGCTTCAATAGTGTGGATAGTGGTGATAAGAGATGGTCAGGGAATGA
GCCTACAGATGAATTTTCGGATCTGCCTCTTCGAGTGGCAGAGATTACCAAAGAGCAAAGACTGCGGAGA
GAAAGCCAGTACCAGGAGAATCGCAGCAGTGTGGCGGTCACAAATGGTGGAGTGGAGCATGATCTGGATC
AGATTGACTACATTGACAGCTGTACTACAGAAGAAGAAGAAAACGACGTGAAACAACCCAAAAGCCTGGA
CACGAACAGTCTCAGCTCACAGTTTATGGCATATATTGAACAACGGAGAATCTCACATGAGGTTTCACCA
GTAAAGCCAATAGCCGTTAGAGAGTTTCAAAAAACAGAAGACATGAAAAGATACTCACATCAAAACAGGG
TTCCAGTTGAGCCATCTTTGGTGTTATCAATGCCACCAAGTCACAATCAGCTTTCACATTCAGACTTGGA
GCTTCATCAGAGGAGAGAGCAGTCTATTGAGTGCACTCGGAGAGAGGCACAGCTTGCTGCCCTGCAGTAC
GAGGAGGAGAAAATAAGGACCAAGCAGATTCAGAGAGATGCTGTCCTAGACTTTGTCAAACAGAAAGCAT
CACACAACCCACAGAGACAGCAGCCCCCTGGGAATGGCGAGTGTTCCTTCCCATCCAGAAGGTCCCAGCA
CACTGATGACAGTGCCTTGCTAGTGTCACTGTCAGGGTTGGATGGAGTGAGCTGCGTGGCTACCCGGCCT
CATTCTTCTGCCTTCACACCTCTCAAGAGCGAAAACAGAGTTGATGTCACCTCAAGCTTTCCTATGACAG
AGACAGGTCGTGCATCCCCGCTTCTCCTGTCATCTGCACCTGCAACTGATCCTACAGATGCTATAACAAG
ACAGAGAGAAGAAGAGCTGAAATTAATAGATCAGCTACGAAAACACATTGAGTACCGGTTGAAAGTCTCT
TTGCCCTGTGACCTTGGAGCAGCTCTAACTGACGGTGTTGTACTTTGCCACTTGGCCAATCATGTTCGGC
CTCGATCTGTCCCAAGCATTCATGTCCCATCCCCAGCCGTGCCTAAATTAACGATGGCAAAGTGCAGGCG
GAATGTGGAGAACTTCCTGGATGCTTGCAGAAAAATCGGTGTACCCCAGGAGCAATTGTGCTTGCCTCTG
CACATTTTAGAAGAGAAAGGGTTGGGCCAGGTTGCAGTGACAGTCCAGGCCCTCCTGGAGCTTGCCCCAC
CCAAGCAGCCGCCACCGCAGCAGCCGCAGCAGCAGCAGCCACAGCTCTCTGCTGTCTGA

Translation (742 aa):
MAAAGLVAVVAAAEYSGPVASGGNLSGATCGPSPGLGPGPGPGSWSRSVDRALEEAAVTGVLSLSGRKLR
EFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAVLNLQALTFLNISRNQL
STLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLLR
LPEELAEVPLIRLDFSCNKITVIPVCYRNLRHLQVITLDNNPLQSPPAQICIKGKIHIFKYLNIQACKIA
PDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRR
ESQYQENRSSVAVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKSLDTNSLSSQFMAYIEQRRISHEVSP
VKPIAVREFQKTEDMKRYSHQNRVPVEPSLVLSMPPSHNQLSHSDLELHQRREQSIECTRREAQLAALQY
EEEKIRTKQIQRDAVLDFVKQKASHNPQRQQPPGNGECSFPSRRSQHTDDSALLVSLSGLDGVSCVATRP
HSSAFTPLKSENRVDVTSSFPMTETGRASPLLLSSAPATDPTDAITRQREEELKLIDQLRKHIEYRLKVS
LPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRKIGVPQEQLCLPL
HILEEKGLGQVAVTVQALLELAPPKQPPPQQPQQQQPQLSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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