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Report for CCDS79371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79371.1 Public Mus musculus 15 Trps1 23 108 98 CCDS HistoryNCBI Gene:83925Re-query CCDS DB by CCDS ID:79371.1Re-query CCDS DB by GeneID:83925See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183997.7 ENSMUSP00000139115.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183997.7Link to Ensembl Protein Viewer:ENSMUSP00000139115.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183997Re-query CCDS DB by Protein ID:ENSMUSP00000139115
Original member Current member NCBI NM_001310485.1 NP_001297414.1 Accepted alive Link to Nucleotide Sequence:NM_001310485.1Link to Protein Sequence:NP_001297414.1Re-query CCDS DB by Nucleotide ID:NM_001310485Re-query CCDS DB by Protein ID:NP_001297414Link to BLAST:NP_001297414.1

Chromosomal Locations for CCDS 79371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 50660675 50661736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50664687 50664809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50765505 50765537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50822105 50822708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50830829 50831006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50831607 50831958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50846014 50846942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 50888942 50888951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3291 nt):
ATGCAGAGTAATATGGTCCGGAAAAAGAACCCCCCTCTGAGAAACGTTGCTAGTGAAGGCGAGGGTCAAA
CCCTGGAGCCAACAGCTACAGAGAGCAAGGTATCTGGGAAGAACAAAGAATTGTCTGCAGATCAGATGTC
AGAAAATACAGATCAGAGTGATGTTGCAGAGTTGAACTCGAAGGAGGAACACAGCACGCATGGCCAAGAG
CCATCTTCCAGCGGTAAGAAGGACTTGCAAATCTCAGGCCTGAGTGAGAAGGCTGGCTTCAATTATGAAA
GCCCCAGTAAGGGAGGGAGCCTTGTCTCCTTCCCACATGATGAGGTAACAGACAGAAATATGTTGGCTTT
CTCATCTCCAGCTGCTGGGGGAGTCTGCGAGCCCTTGAAGTCTCCTCAAAGAGCAGAGGCAGATGACCCT
CAAGATATGGCCTGCACCCCATCAGGGGATTCATTGGAGACAAAGGAAGAGCATAAAATGTCACCAAAGG
CCACTGAGGAAACAGGGCCAGTGCAGAGTGGTCAAGCCAATTGTCAAGGTTTGAGTCCAGTTTCCGTGGC
CTCAAAAAACCCACAAGTGCCTTCAGATGGGGGTGTCAGACTGAGTAAACCCAAAGGTGACTTACTGGTG
AATGACAACCCAGACCCGGCACCTCTGTCTCCAGAGCTTCAGGACTTTAAATGCAATATCTGTGGATACG
GTTACTATGGCAATGACCCCACAGATCTGATTAAGCACTTCCGAAAGTATCACTTAGGACTGCATAATCG
CACCAGGCAGGATGCTGAGCTGGACAGCAAAATCTTGGCCCTTCATAACATGGTGCAGTTCAGCCATTCC
AAAGACTTCCAGAAGGTCAACCGTTCTGTGCTTTCTGGCGTGCTGCAGGATATCAGCTCTTCACGGCCTG
CTTTACTAAACGGAACCTATGATGTACAGGTCACTTCAGGAGGAACTTTCATTGGCATTGGACGGAAAAC
TCCAGATTGCCAAGGCAACACCAAGTATTTCCGCTGCAAATTCTGCAATTTCACTTATATGGGAAACTCC
TCAACTGAACTAGAGCAACATTTTCTTCAGACGCACCCGAATAAAATCAAAGTGTCTCTCCCGTCCTCCG
AGGGTGTGAAACCTTCAGAGAAAAACTCTAACAAATCCATCCCTGCGCTTCGAGCCAGTGACTCTGGGGA
TGTGGGAAAGTGGCAGGACAAAATGACAGTCAAAGCTGGAGATGACACCCCTGTCGGCTACTCAGTGCCC
ATCAAGCCCCTCGATTCCTCACGACAAAATGATGTGCTCCTCTTTCACTATGAGACCGTGCATGAGTCCC
AAGCATCGGATGTCAAACAGGAGGCCAACCACCTGCTAGGATCTGACGGGCAGCAGGCTGTCAGGGACAG
CAAGGAGCACTCGTGCACCAAATGCGATTTTATAACCCAGGTGGAAGAAGAGATCTCGAGACACTACAGG
AGAGCACACAGCTGCTATAAATGTCGTCAGTGCAGTTTCACAGCTGCTGACACTCAGTCACTATTGGAGC
ACTTCAACACAGTTCACTGCCAGGAACAGGAAATCACTACTGCTAATGGCGAAGAGGGTGGCCATGCCAT
ACCCACCATCAAAGAAGAGCCCAAAATTGACCTCAAGGTCTACAGTCTGCTAAACCCAGACTCTAAAATG
GGAGAAACAGTTCCCGAGAGCATAGTCAAGAGAGAGAAACTTGATGACAAGGAAGGGCTGAAAGATAAAA
TCTGGACTGAGAGTTCAACTGATGACCTTCGTGGTGTGGCTTGGAGAGGGGCAGACATCCTACGGGGTAG
TCCATCCTACACTCAAGCAAGCTTAGGGGTCTTGACGCCTGTGTCCAGCTCCCAAGAGCAGACAAAGACT
CTGAGGGACAGCCCCAATGTTGAAGCTGCCCACCTGGCACGACCTATGTATGGCTTGGCAGTAGATACCA
AGGGCTTCCTGCAAGGGGCTCCTGCTGGCAGCGAGAAGTCTGCATCTCTTACCCAGCAGTATCCTGCCTC
CGGAGAGAGCAAGACCAAGGATGAATCCCAGTCGCTGTTACGGGCTGTGACAATCTCCGGAACACCAAAC
AGGAGGAGGCGAAGAGGATCTGGTGTTTTTTGTGCCAATTGCCTGACCACAAAGACCTCTCTCTGGCGAA
AGAATGCAAATGGCGGATATGTATGCAATGCATGTGGTCTCTACCAGAAACTTCACTCGACTCCCAGGCC
TTTAAACATCATTAAACAAAACAACGGCGAGCAGATTATTAGAAGACGGACAAGAAAGCGCCTTAACCCA
GAGGCACTTCAGGCTGAGCAGCTCAACAAACAGCAGAGGGGAAGTGGGGAGGAGCAGGTCAATGGAAGCC
CCTTAGAGAGGAGGTCAGAAGATCACTTAAGTGAAAGTCATCCGAGAGAAATTCCACTTCCGAGCCTGAG
TAAATACGAAGCCCAGGGTTCATTGACTAAAAGCCATTCTGCTCAGCAGCCAGTCCTGGTCAGCCAAGCT
CTGGATATCCACAAAAGGATGCAGCCTTTGCACATTCAGATAAAAAGTCCTCAGGAAAGTACTGGAGATC
CAGGAAATAGTTCATCCGTATCTGATGGGAAAGGAAGTTCTGAAAGAGGCAGCCCCATCGAAAAGTACAT
GAGACCTGCAAAACACCCCAACTATTCTCCACCAGGCAGCCCCATCGAAAAGTACCAATACCCGCTTTTT
GGAGTTCCTTTTGTACATAATGACTTCCAGAGTGAAGCTGATTGGCTACGGTTCTGGAGTAAATATAAGC
TCTCCGTTCCTGGGAATCCGCACTACTTGAGTCATGTGCCTGGCTTACCAAATCCTTGCCAAAACTATGT
GCCTTATCCCACCTTCAATCTGCCTCCTCATTTCTCAGCTGTTGGATCAGACAATGACATTCCTCTAGAT
TTGGCGATCAAGCATTCCAGACCTGGGCCAACTGCAAATGGTGCCTCCAAGGAGAAAACCAAGGCACCAC
CAACTGTAAAAAATGAAGGTCCCTTGAATGTAGTTAAGACGGAGAAAGTTGACAGAAGCACTCAAGATGA
ACTTTCAACGAAATGTGTGCACTGTGGCATTGTTTTTCTGGATGAAGTGATGTATGCTTTGCATATGAGT
TGCCATGGTGACAGTGGACCTTTCCAGTGCAGCATATGCCAGCATCTTTGCACGGACAAATATGACTTCA
CAACACATATCCAGAGGGGCCTGCATAGGAACAATGCACAAGCAGAAAAAAATGGAAAACCTAAAGAGTA
A

Translation (1096 aa):
MQSNMVRKKNPPLRNVASEGEGQTLEPTATESKVSGKNKELSADQMSENTDQSDVAELNSKEEHSTHGQE
PSSSGKKDLQISGLSEKAGFNYESPSKGGSLVSFPHDEVTDRNMLAFSSPAAGGVCEPLKSPQRAEADDP
QDMACTPSGDSLETKEEHKMSPKATEETGPVQSGQANCQGLSPVSVASKNPQVPSDGGVRLSKPKGDLLV
NDNPDPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGLHNRTRQDAELDSKILALHNMVQFSHS
KDFQKVNRSVLSGVLQDISSSRPALLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNS
STELEQHFLQTHPNKIKVSLPSSEGVKPSEKNSNKSIPALRASDSGDVGKWQDKMTVKAGDDTPVGYSVP
IKPLDSSRQNDVLLFHYETVHESQASDVKQEANHLLGSDGQQAVRDSKEHSCTKCDFITQVEEEISRHYR
RAHSCYKCRQCSFTAADTQSLLEHFNTVHCQEQEITTANGEEGGHAIPTIKEEPKIDLKVYSLLNPDSKM
GETVPESIVKREKLDDKEGLKDKIWTESSTDDLRGVAWRGADILRGSPSYTQASLGVLTPVSSSQEQTKT
LRDSPNVEAAHLARPMYGLAVDTKGFLQGAPAGSEKSASLTQQYPASGESKTKDESQSLLRAVTISGTPN
RRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNP
EALQAEQLNKQQRGSGEEQVNGSPLERRSEDHLSESHPREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQA
LDIHKRMQPLHIQIKSPQESTGDPGNSSSVSDGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLF
GVPFVHNDFQSEADWLRFWSKYKLSVPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLD
LAIKHSRPGPTANGASKEKTKAPPTVKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHMS
CHGDSGPFQCSICQHLCTDKYDFTTHIQRGLHRNNAQAEKNGKPKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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