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Report for CCDS79178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79178.1 Public Mus musculus 13 Txndc5 23 108 98 CCDS HistoryNCBI Gene:105245Re-query CCDS DB by CCDS ID:79178.1Re-query CCDS DB by GeneID:105245See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162075.7 ENSMUSP00000124516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162075.7Link to Ensembl Protein Viewer:ENSMUSP00000124516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162075Re-query CCDS DB by Protein ID:ENSMUSP00000124516
Original member Current member NCBI NM_001289598.1 NP_001276527.1 Accepted alive Link to Nucleotide Sequence:NM_001289598.1Link to Protein Sequence:NP_001276527.1Re-query CCDS DB by Nucleotide ID:NM_001289598Re-query CCDS DB by Protein ID:NP_001276527Link to BLAST:NP_001276527.1

Chromosomal Locations for CCDS 79178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 38501586 38501708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38503431 38503560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38504724 38504806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38506949 38507089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38507894 38507980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38510127 38510242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38513068 38513164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38518983 38519088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 38523329 38523417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGAGGATGCCAAGGTCTACGTGGCCAAAGTGGACTGCACGGCTGATTCCGACGTGTGCTCTGCCCAGG
GAGTGCGAGGATACCCCACCCTGAAGTTTTTTAAGCCTGGACAAGAAGCAGTGAAGTACCAGGGTCCTAG
AGACTTTGAAACACTGGAAAACTGGATGCTGCAGACACTGAACGAGGAGCCAGCCACACCGGAGCCGGAA
GCGGAACCACCCAGAGCCCCTGAGCTCAAACAGGGGTTGTATGAGCTCTCGGCCAACAACTTTGAGCTGC
ATGTTTCTCAAGGCAACCACTTTATCAAGTTCTTCGCTCCGTGGTGCGGTCACTGCAAAGCTCTGGCTCC
AACCTGGGAGCAGCTGGCTCTGGGCCTTGAACATTCTGAAACCGTCAAGATTGGCAAGGTTGACTGCACG
CAGCACTACGCTGTCTGCTCAGAGCATCAGGTCAGAGGCTATCCAACTCTGCTCTGGTTTCGAGATGGCA
AGAAGGTGGATCAGTACAAGGGAAAGCGGGACTTGGAGTCACTGAGAGACTATGTGCAGTCCCAGCTGCA
GGGTTCAGAGGCAGCTCCGGAGACTGTTGAGCCGTCAGAGGCCCCAGTGATGGCTGCTGAGCCCACGGGT
GACAAGGGCACTGTGCTGGCACTCACCGAGAAGAGCTTCGAGGACACTATTGCACAGGGGATAACCTTCG
TCAAGTTCTATGCTCCGTGGTGTGGCCACTGTAAGAATCTGGCTCCTACCTGGGAGGAGCTCTCTAAAAA
GGAATTCCCAGGCTTGTCAGATGTCACCATCGCAGAAGTGGACTGCACCGCTGAGCGCAATGTCTGCAGC
AAGTACTCGGTACGAGGTTATCCCACGTTGCTGCTTTTCCGAGGAGGTGAAAAAGTGGGAGAACACAACG
GAGGTAGAGACCTCGACTCCTTACACAGCTTTGTTCTGCGCCAGGCAAAGGATGAACTATAG

Translation (323 aa):
MEDAKVYVAKVDCTADSDVCSAQGVRGYPTLKFFKPGQEAVKYQGPRDFETLENWMLQTLNEEPATPEPE
AEPPRAPELKQGLYELSANNFELHVSQGNHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCT
QHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQLQGSEAAPETVEPSEAPVMAAEPTG
DKGTVLALTEKSFEDTIAQGITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERNVCS
KYSVRGYPTLLLFRGGEKVGEHNGGRDLDSLHSFVLRQAKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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