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Report for CCDS79106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79106.1 Public Mus musculus 12 Nt5c1b 23 108 98 CCDS HistoryNCBI Gene:70881Re-query CCDS DB by CCDS ID:79106.1Re-query CCDS DB by GeneID:70881See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118657.7 ENSMUSP00000112694.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118657.7Link to Ensembl Protein Viewer:ENSMUSP00000112694.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118657Re-query CCDS DB by Protein ID:ENSMUSP00000112694
Original member Current member NCBI NM_001310582.1 NP_001297511.1 Accepted alive Link to Nucleotide Sequence:NM_001310582.1Link to Protein Sequence:NP_001297511.1Re-query CCDS DB by Nucleotide ID:NM_001310582Re-query CCDS DB by Protein ID:NP_001297511Link to BLAST:NP_001297511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297511.1 555 Q91YE9-2 555 100% 0 0

Chromosomal Locations for CCDS 79106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 10370063 10370095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10371654 10371743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10372832 10372969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10374723 10375193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10375419 10375586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10377158 10377287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10380799 10380921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10381306 10381490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10389804 10390133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGAGTCAAACATCCTTGAAACACAAAAAGAAAAATGAACCTGGAATGAGGTACTCAAAAGAGAGTCTAG
ATGCAGAGAAAAGAAAGGATTCTGACAAAACTGGAGCTCGTCTGAGCACTCAGGGATCCCAAGAATTACC
TCTGCATAATACAGACTCCCGAGGTTACGTTGTACGAAATCAGTGGTCCCGAACATCACGGAGCCCATCT
ACTGGAGCTCCATCAGTGGATGAGCCCAGAAGCAGGAATACTGCCATCAAGGCCCCTAACAGCTCCACTA
CCTCTCGAACTTCCTCTGCCTCCCCCAGTCAACACGAGACCTCACCTCCACCTCAGACATCAGAGAAGTC
CTCCATTCAACAGACCCCCCAGAACAGACCTATCACCCAGCTTGAATCACAACCTCCCACACCTCCGGAA
ACAGAGCCAAACTCGAGACGAACATCGGCGAAGATGTATACGGGCAGTGATCCGTGGGCGCACAGGGAAA
ACAGAGAGCCTAGAGACTTGCAGCTGAGGGACTATGCATACAGCTGTGACTCACGAGAAGGGATGCCCAA
GACCCGAGAGTATCCGCGCACTCCTCCTACTGAGTGGAAGCCCTATGCCCAGCGTCGCCTCCAGTATGGC
ACCTCTGTGGACATGGAACCGGAATATATATCCGATGGCCCGCAGCAGAGGCAGAGGCAGCAGACAGAGG
AAGATGAGGTGGATGAGGCCTACTGGACATCTCCCAAACCCAAGCATGCCATCACCATTGCCGTCTCTTC
TCGGGCACTTTTCAATATGGTAGATGACAGGAAAATCTACGAAGAGGAAGGTCTGGAGAAGTACATGGAG
TATCAGCTCACCAACGAGAACGTCATCCTGACGCCAGGGCCAGCGTTCCGGTTTGTCAAGGCACTGCAGC
ATGTCAACTCTAGACTCCGTGATCTGTATCCTGACGAACAGGACTTATTCGATATAGTACTGATGACTAA
TAACCATGCCCAAGTGGGAGTAAGGCTTATAAACAGCGTCAATCACTATGGTCTACTGATTGACCGCTTC
TGTTTGACGGGTGGGAAAAGCCCCATTGGATATTTGAAGGCATATCTTACCAACCTGTATCTTTCTGCTG
ATTCTGAAAAAGTACAAGAAGCAATAAAAGAAGGTATTGCCTCTGCAACCATGTATGCTGGAGCCAAAGA
CATGGCTTATTGCGACACACAGCTACGCGTGGCCTTTGATGGGGATGCTGTCCTCTTCTCAGATGAATCT
GAACATATTGCCAAGGATCATGGGCTGGACAAATTTTTCCAACATGAAACACTATTTGAGAATAAGCCTC
TTGCTCAGGGTCCTCTTAAAAGCTTTCTGGAAGATTTAGGGAAACTGCAGAAAAAATTCTATGCCAAAGA
CGAACGATTGCTTTGCCCCATCAGGACCTACCTGGTTACAGCTCGTAGTGCAGCGAGTTCAGGTGCCCGT
GTGCTGAAGACCCTTCGCCGATGGGGTCTAGAGATAGATGAAGCTCTTTTCCTGGCTGGAGCCCCTAAAG
GTCCCATCTTAGTGAAGATTCGGCCCCACATCTTCTTCGACGACCAAATGTTCCACATTGAATCAGCACA
GAAATTTGGTACCATCACGGCCCATGTGCCTTATGGCATTGCTCAAAAACGCAACTAG

Translation (555 aa):
MSQTSLKHKKKNEPGMRYSKESLDAEKRKDSDKTGARLSTQGSQELPLHNTDSRGYVVRNQWSRTSRSPS
TGAPSVDEPRSRNTAIKAPNSSTTSRTSSASPSQHETSPPPQTSEKSSIQQTPQNRPITQLESQPPTPPE
TEPNSRRTSAKMYTGSDPWAHRENREPRDLQLRDYAYSCDSREGMPKTREYPRTPPTEWKPYAQRRLQYG
TSVDMEPEYISDGPQQRQRQQTEEDEVDEAYWTSPKPKHAITIAVSSRALFNMVDDRKIYEEEGLEKYME
YQLTNENVILTPGPAFRFVKALQHVNSRLRDLYPDEQDLFDIVLMTNNHAQVGVRLINSVNHYGLLIDRF
CLTGGKSPIGYLKAYLTNLYLSADSEKVQEAIKEGIASATMYAGAKDMAYCDTQLRVAFDGDAVLFSDES
EHIAKDHGLDKFFQHETLFENKPLAQGPLKSFLEDLGKLQKKFYAKDERLLCPIRTYLVTARSAASSGAR
VLKTLRRWGLEIDEALFLAGAPKGPILVKIRPHIFFDDQMFHIESAQKFGTITAHVPYGIAQKRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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