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Report for CCDS78965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78965.1 Public Mus musculus 11 Specc1 23 108 98 CCDS HistoryNCBI Gene:432572Re-query CCDS DB by CCDS ID:78965.1Re-query CCDS DB by GeneID:432572See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201364.3 ENSMUSP00000143853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201364.3Link to Ensembl Protein Viewer:ENSMUSP00000143853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201364Re-query CCDS DB by Protein ID:ENSMUSP00000143853
Original member Current member NCBI NM_001281818.1 NP_001268747.1 Accepted alive Link to Nucleotide Sequence:NM_001281818.1Link to Protein Sequence:NP_001268747.1Re-query CCDS DB by Nucleotide ID:NM_001281818Re-query CCDS DB by Protein ID:NP_001268747Link to BLAST:NP_001268747.1

Chromosomal Locations for CCDS 78965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62029276 62029422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62042943 62043075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62117700 62119282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62128200 62128407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62131830 62131903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62132276 62132454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62146306 62146451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62147568 62147668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62151870 62151951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62156487 62156640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62161808 62161910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62205384 62205500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62211644 62211703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62219285 62219374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3177 nt):
ATGCGGAGTGCCGCCAAGCCCTGGAGTCCAGTCGCCAAAGCAGGCAGCCATGGTCCTGATCGCACTCGGC
CCCTCCCTGGCACTCCTTCTGGCATGAAGAGTTCCAAGTCTTCAACCTCACTGGCTTTCGAGTCTCGGCT
GAGTAAGCTCAAGAGGGCCAGCAGCGAGGACACACTCAACAAACCTGGAAGTGCCTCTTCAGGGGTGGCG
AGACTGAAGAAGACCTCAACCTCCGGAGCCATCTCTGAGCTCACTGAGAGCCGCCTGAGGAGCAACACAG
GGACTATTCCAACAACTAAACGGACAGGCATTCCAGCTCCACGGGAGCTCTCAGTAACTATCTCCAGAGA
GAGGTCTGTGCCACGTGGTCCCTCCAGCTCAAAGAAGTTAGGCTCCAGCCCAACTTCTTCCTGCAATCCC
ACTCCTACCAAGCATCTGAGGACCACCCCTGCAAAACCTAAGCAAGAGCATGAAGGTGCAGAGAAGGCTG
TGCTCGAGTCCCAGGTACGAGAACTTCTGGCAGAAGCCAAAACCAAAGACAGTGAAATCAACAGGCTTCG
AAGTGAACTAAAAAAATGCAAAGAGAGGTGGGCCCTGAGCACTGAGGATGCCAATGCTTCAGACCCAAGT
GCAGAGGGAACAGCATCCCCAGAAAGTGATGCACAGCCTTTGATAAGAACCCTGGAGGAGAAGAACAAGA
CCTTTCAGAAAGAGCTTGCTGACCTAGAGGAAGAAAACAGGGCCTTGAAGGAGAAACTGACTTACCTTGA
GCAGTCACCAAATTCAGAAGGGGCAGCAAGTCACACTGGTGACAGCAGCTGCCCAACATCTATAACCCAC
GAGTCCAGTTTTGGAAGCCCAGTTGGAAATGAGTTGTCTAGTGAAACAGATGAGTACAGAAGAACCACAC
ATGGGAGTGCCTTGCGGACATCAGGGTCTTCAAGCAGTGATGTCACCAAAGCCTCTCTGTCACCGGACGC
CTCAGATTTTGAGCATATCACTGCAGACACCCCGTCTCGGCCCCTGTCAGCCACTAGCAACCCTTTTAAG
AGCTCCAAGGGCTCCCCTACTGGGAGCTCCCCAAACAATGCAAGTGAGCTGTCCTTGGCATCTCTCACGG
AGAAGATACAGAAGATGGAGGAGAATCAGCACAGCACTGCAGAAGAGCTGCAGGCTACTCTGCAGGAATT
ATCAGACCAGCAGCAGATGGTGCAGGAACTGACAGCCGAGAACGAGAAGCTAGTGGATGAGAAGACCATT
CTGGAGACCTCCTTCCACCAGCACCGAGAGAGGGCAGAACAGCTGAGTCAGGAAAATGAGAAGCTGATCA
ACCTTTTACAGGAGCGAGTGAAGAATGAGGAACCCAGTGCCCAGGGAGGGAAGGTCCTTGAGCTGGAGCA
GAAGTGCACGGATATTCTCGAGAAGAGCCGCTTTGAAAGAGAGAAGCTGCTCAACATTCAGCAGCAGCTG
ACCTGTAGCCTACGGAAGGTTGAGGAAGAAAACCAAGGCGCTATAGACATGATTAAGCACCTGAAGGAAG
AAAATGAGAAGCTGAATGGGTTCCTAGAACATGAGCGGTGTAATAATAGTGTGATGGCCAAAACTCTGGA
GGAATGTCGAGTTACCTTGGAAGGCTTGAAAATGGAGAATGGGTCCTTGAAGGCTCTTTTGGAGGCTGAT
AAGCAAAAAGCCATAGAGGCCAGCAGTACTGTGGGGCAGACAGCAGAGAACTTCGAGGTTCAGGAGATGC
TGAAAGTGGCTCGAGCTGAGAAAGATCAGTTGCAGCTGTCTTGCACAGAGCTCAGACAAGAATTGCTAAA
GGCAAATGGTGAAATTAAACATGTTTCCAGCCTGCTAGCTAAGATGGAGAAAGATTATTCGTACCTGAAA
GAAGTCTGTGATCATCAAGCAGAACAGCTGAGCAGAACCAGCCTAAAATTACAAGAGAAAGCTTCAGAAA
GTGACGCAGAAATCAAAGACATGAAAGAGACCATATTTGAATTGGAAGACCAGGTGGAGCAGCATCGCGC
CGTCAAGTTACACAATAACCAGCTCATCAGTGAGCTGGAAGGCAGTGTGATCAAGCTGGAGGAGCAGAAG
TCAGACCTAGAGCGGCAGTTAAAGACGCTAACAAAACAGATAAAGGAGGAAACAGAAGAATGGAGGCGAT
TCCAGGCAGACTTACAGACTGCAGTGGTAGTGGCCAACGACATCAAGTGTGAGGCTCAGCAGGAGCTGCG
CACTGTGAAGAGGAGGTTGCTGGAGGAGGAAGAGAAAAATGCCAGGCTGCAGAAGGAGCTGGGAGACATA
CAGGGGCACAGCAGACCTGTGAATGAAGAGCCAGAGCCCTCAGAGGCCGATGCTGCTGGCCGGTGGCGTG
GAGTCTATGTCAACAGAACATCTCCAGCTCCTTCAGACTCTGCAACCACAGTAAAGTCACTGATCAAATC
ATTTGACTTAGGACACTCAGGTGGAACTGGCCAGAGTATTTCTGTCCACAAGACTCCCAGAAGCCCCCTG
AGTGGAATCCCAGTGAGGACTGCTCCTGCCGCTGCTGTCTCTCCGATGCAGAGACATTCAACATACAGCA
GCATGAAGCCAGCCAGCAAAGGGACGTCTCAGCGCTTGGATCTGCCGGACCTTCCCCTCTCTGATCTGCT
GAAGGGAAGGGCCGAGGACCGGAAGTCAGACCCTTACCTCCGAAAGAGTCCCTCACTGGAGTCCCTGAGC
AGACCCCCCTCCCTGGGCTTTGGGAACACCAGACTGCTGAGTGCGTCCACCGGGGGTCTGAAGCCAAGCA
AGCTCAGTGTTGAAAGAAGAGACCCTCTGGCAGCCCTGGCCCGGGAGTATGGTGGCTCTAAGCGTAACGC
ACTCCTGAAATGGTGTCAGAAGAAGACAGAAGGTTATGCGAACATTGATATCACCAATTTCAGCAGCAGC
TGGAGTGATGGGCTGGCCCTCTGTGCTCTGCTGCACACCTACCTGCCTGCCCACATCCCATACCAGGAAT
TGAACAGTCAGGAGAAAAAAAGGAATCTCCTGTTGGCATTTGAAGCCGCGCAGAGTGTAGGCATCAACCC
CAGCCTGGAGCTCAGTGAGATGCTGTACACGGACCGGCCTGACTGGCAGAGCGTGATGCAGTATGTGGCC
CAGATCTACAAGTACTTTGAGACATAA

Translation (1058 aa):
MRSAAKPWSPVAKAGSHGPDRTRPLPGTPSGMKSSKSSTSLAFESRLSKLKRASSEDTLNKPGSASSGVA
RLKKTSTSGAISELTESRLRSNTGTIPTTKRTGIPAPRELSVTISRERSVPRGPSSSKKLGSSPTSSCNP
TPTKHLRTTPAKPKQEHEGAEKAVLESQVRELLAEAKTKDSEINRLRSELKKCKERWALSTEDANASDPS
AEGTASPESDAQPLIRTLEEKNKTFQKELADLEEENRALKEKLTYLEQSPNSEGAASHTGDSSCPTSITH
ESSFGSPVGNELSSETDEYRRTTHGSALRTSGSSSSDVTKASLSPDASDFEHITADTPSRPLSATSNPFK
SSKGSPTGSSPNNASELSLASLTEKIQKMEENQHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKTI
LETSFHQHRERAEQLSQENEKLINLLQERVKNEEPSAQGGKVLELEQKCTDILEKSRFEREKLLNIQQQL
TCSLRKVEEENQGAIDMIKHLKEENEKLNGFLEHERCNNSVMAKTLEECRVTLEGLKMENGSLKALLEAD
KQKAIEASSTVGQTAENFEVQEMLKVARAEKDQLQLSCTELRQELLKANGEIKHVSSLLAKMEKDYSYLK
EVCDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELEGSVIKLEEQK
SDLERQLKTLTKQIKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRRLLEEEEKNARLQKELGDI
QGHSRPVNEEPEPSEADAAGRWRGVYVNRTSPAPSDSATTVKSLIKSFDLGHSGGTGQSISVHKTPRSPL
SGIPVRTAPAAAVSPMQRHSTYSSMKPASKGTSQRLDLPDLPLSDLLKGRAEDRKSDPYLRKSPSLESLS
RPPSLGFGNTRLLSASTGGLKPSKLSVERRDPLAALAREYGGSKRNALLKWCQKKTEGYANIDITNFSSS
WSDGLALCALLHTYLPAHIPYQELNSQEKKRNLLLAFEAAQSVGINPSLELSEMLYTDRPDWQSVMQYVA
QIYKYFET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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