NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7893.1 Public Homo sapiens 11 ELF5 24 110 108 CCDS HistoryNCBI Gene:2001Re-query CCDS DB by CCDS ID:7893.1Re-query CCDS DB by GeneID:2001See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257832.7 ENSP00000257832.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257832.7Link to Ensembl Protein Viewer:ENSP00000257832.3Re-query CCDS DB by Nucleotide ID:ENST00000257832Re-query CCDS DB by Protein ID:ENSP00000257832
Original member Current member NCBI NM_001422.4 NP_001413.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001422.4Link to Protein Sequence:NP_001413.1Re-query CCDS DB by Nucleotide ID:NM_001422Re-query CCDS DB by Protein ID:NP_001413Link to BLAST:NP_001413.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001413.1 255 Q9UKW6-2 255 100% 0 0

Chromosomal Locations for CCDS 7893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34480218 34480314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34480772 34480967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34482431 34482499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34490009 34490059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34493479 34493712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34505629 34505749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGTTGGACTCGGTGACACACAGCACCTTCCTGCCTAATGCATCCTTCTGCGATCCCCTGATGTCGTGGA
CTGATCTGTTCAGCAATGAAGAGTACTACCCTGCCTTTGAGCATCAGACAGCCTGTGACTCATACTGGAC
ATCAGTCCACCCTGAATACTGGACTAAGCGCCATGTGTGGGAGTGGCTCCAGTTCTGCTGCGACCAGTAC
AAGTTGGACACCAATTGCATCTCCTTCTGCAACTTCAACATCAGTGGCCTGCAGCTGTGCAGCATGACAC
AGGAGGAGTTCGTCGAGGCAGCTGGCCTCTGCGGCGAGTACCTGTACTTCATCCTCCAGAACATCCGCAC
ACAAGGTTACTCCTTTTTTAATGACGCTGAAGAAAGCAAGGCCACCATCAAAGACTATGCTGATTCCAAC
TGCTTGAAAACAAGTGGCATCAAAAGTCAAGACTGTCACAGTCATAGTAGAACAAGCCTCCAAAGTTCTC
ATCTATGGGAATTTGTACGAGACCTGCTTCTATCTCCTGAAGAAAACTGTGGCATTCTGGAATGGGAAGA
TAGGGAACAAGGAATTTTTCGGGTGGTTAAATCGGAAGCCCTGGCAAAGATGTGGGGACAAAGGAAGAAA
AATGACAGAATGACATATGAAAAGTTGAGCAGAGCCCTGAGATACTACTATAAAACAGGAATTTTGGAGC
GGGTTGACCGAAGGTTAGTGTACAAATTTGGAAAAAATGCACACGGGTGGCAGGAAGACAAGCTATGA

Translation (255 aa):
MLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQY
KLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYFILQNIRTQGYSFFNDAEESKATIKDYADSN
CLKTSGIKSQDCHSHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKK
NDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH