NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7892.1 Public Homo sapiens 11 ELF5 24 110 108 CCDS HistoryNCBI Gene:2001Re-query CCDS DB by CCDS ID:7892.1Re-query CCDS DB by GeneID:2001See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312319.6 ENSP00000311010.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312319.6Link to Ensembl Protein Viewer:ENSP00000311010.2Re-query CCDS DB by Nucleotide ID:ENST00000312319Re-query CCDS DB by Protein ID:ENSP00000311010
Original member Current member NCBI NM_198381.2 NP_938195.1 Accepted alive Link to Nucleotide Sequence:NM_198381.2Link to Protein Sequence:NP_938195.1Re-query CCDS DB by Nucleotide ID:NM_198381Re-query CCDS DB by Protein ID:NP_938195Link to BLAST:NP_938195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938195.1 265 Q9UKW6-1 265 100% 0 0

Chromosomal Locations for CCDS 7892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34480218 34480314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34480772 34480967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34482431 34482499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34490009 34490059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34493479 34493712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34505629 34505753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34511544 34511569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGCCATCTCTGCCTCACTCCCACAGGGTAATGTTGGACTCGGTGACACACAGCACCTTCCTGCCTAATG
CATCCTTCTGCGATCCCCTGATGTCGTGGACTGATCTGTTCAGCAATGAAGAGTACTACCCTGCCTTTGA
GCATCAGACAGCCTGTGACTCATACTGGACATCAGTCCACCCTGAATACTGGACTAAGCGCCATGTGTGG
GAGTGGCTCCAGTTCTGCTGCGACCAGTACAAGTTGGACACCAATTGCATCTCCTTCTGCAACTTCAACA
TCAGTGGCCTGCAGCTGTGCAGCATGACACAGGAGGAGTTCGTCGAGGCAGCTGGCCTCTGCGGCGAGTA
CCTGTACTTCATCCTCCAGAACATCCGCACACAAGGTTACTCCTTTTTTAATGACGCTGAAGAAAGCAAG
GCCACCATCAAAGACTATGCTGATTCCAACTGCTTGAAAACAAGTGGCATCAAAAGTCAAGACTGTCACA
GTCATAGTAGAACAAGCCTCCAAAGTTCTCATCTATGGGAATTTGTACGAGACCTGCTTCTATCTCCTGA
AGAAAACTGTGGCATTCTGGAATGGGAAGATAGGGAACAAGGAATTTTTCGGGTGGTTAAATCGGAAGCC
CTGGCAAAGATGTGGGGACAAAGGAAGAAAAATGACAGAATGACATATGAAAAGTTGAGCAGAGCCCTGA
GATACTACTATAAAACAGGAATTTTGGAGCGGGTTGACCGAAGGTTAGTGTACAAATTTGGAAAAAATGC
ACACGGGTGGCAGGAAGACAAGCTATGA

Translation (265 aa):
MPSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVW
EWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYFILQNIRTQGYSFFNDAEESK
ATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEA
LAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH