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Report for CCDS78821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78821.1 Public Mus musculus 10 Col13a1 23 108 98 CCDS HistoryNCBI Gene:12817Re-query CCDS DB by CCDS ID:78821.1Re-query CCDS DB by GeneID:12817See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105453.7 ENSMUSP00000101093.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105453.7Link to Ensembl Protein Viewer:ENSMUSP00000101093.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105453Re-query CCDS DB by Protein ID:ENSMUSP00000101093
Original member Current member NCBI NM_001304757.1 NP_001291686.1 Accepted alive Link to Nucleotide Sequence:NM_001304757.1Link to Protein Sequence:NP_001291686.1Re-query CCDS DB by Nucleotide ID:NM_001304757Re-query CCDS DB by Protein ID:NP_001291686Link to BLAST:NP_001291686.1

Chromosomal Locations for CCDS 78821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61838706 61838708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61840078 61840116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61843568 61843654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61849176 61849211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61850157 61850210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61851112 61851165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61856338 61856418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61856782 61856808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61857588 61857629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61860440 61860484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61862628 61862771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61863044 61863088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61863941 61864003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61866391 61866414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61867452 61867520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61867831 61867875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61869524 61869577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61870161 61870247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61871290 61871334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61873994 61874020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61874738 61874770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61876268 61876312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61884676 61884711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61885688 61885714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61887249 61887356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61891208 61891264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61892956 61892982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61893915 61893941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61894034 61894060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61895334 61895360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61896346 61896372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61897139 61897174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61903090 61903140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61908682 61908717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61911707 61911733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61920089 61920096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61961289 61961358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61978349 61978636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGTGGCGGAGCGCACCCGCAAAGCGGCAGCCTCTGGCAGCCGCGGCCCTGGGGAGCTGGGCGCTCCGG
GGCCCGGGACAGTGGCGCTGGCTGAGCAGTGCGCTAGGCTGCCGAGCCCCGGGTGCTGCGGACTGCTGGC
TCTAGCGCTGTGTTCGCTGGCGCTCAGCCTGCTCGCCCACTTTCGGACCGCGGAGCTGCAGGCCCGGGTG
CTGCGCTTGGAAGCAGAGCGCGGGGAGCAGCAGATGGAGAAAGCTATTTTGGGACGAGTCAACCAACTGC
TGGACGAGAAATGGAAGTTCTACTCGCGTAGGCGCCGGGAAGCCCCGAAGATGTCTCCAGGATGTAACTG
CCCACCAGGACCTCCTGGTCCCACTGGAAGACCTGGACTCCCAGGGGACAAGGGTGCCATCGGGATGCCT
GGACGTGTGGGTGCCCCTGGAGATGCGGGGATGTCCATCGTCGGGCCTCGAGGCCCCCCTGGCCAGCCTG
GTACCCGAGGTTTCCCTGGATTCCCGGGTCCCATTGGTCTTGACGGCAGGCCGGGCCACCCCGGACCTAA
AGGGGAGATGGGCCTGGTGGGTCCTCGAGGACAACCGGGACCTCAGGGACAAAAGGGAGAAAAGGGTCAG
TGTGGAGAGTACCCACACAGGGAGTACCCAGGCGGCATGCTAGCAGCTCTGCGCTCCAACCCGATAATGT
CCCTAAAGGGGGAACAAAGTCAGACTGGCATCCAAGGCCCTCCAGGGCCACCGGGCCCCCCAGGACCAAG
TGGCCCTCTGGGACACCCAGGACTGCCAGGGCCTATAGGGCCACCTGGTTTACCGGGGCCTCCTGGACCA
AAGGGAGACCCAGGGATCCAGGGCTATCATGGCCGCAAGGGAGAGCGGGGCATGCCAGGAATGCCAGGCA
AGCACGGAGCCAAGGGGGTTCCTGGGATTGCCGTGGCTGGGATGAAGGGTGAGCCAGGGACGCCAGGAAC
CAAGGGTGAGAAGGGTGCAGCAGGCTCCCCTGGCCTCCTGGGGCAGAAGGGAGAAAAAGGTGATGCTGGC
AATGCCATCGGAGGAGGCAGGGGGGAGCCTGGCCCCCCGGGGCTCCCTGGGCCCCCTGGGCCAAAGGGAG
AAGCTGGTGTTGATGGCCAGGCTGGGCCCCCAGGACAGCAAGGAGACAAGGGGCAGCCAGGAGCAGCTGG
TGAACAGGGACCCTCTGGCCCCAAGGGTGCCAAGGGTGAACCCGGCAAAGGAGAGATGGTGGATTATAAT
GGCAGCATCAACGAGGCGCTTCAGGAGATCAGGACGCTGGCCTTGATGGGGCCTCCTGGTCTTCCTGGAC
AAACAGGCCCACCCGGACCTCCAGGGACTCCAGGCCAAAGGGGGGAGATTGGACTGCCAGGCCCTCCAGG
ACACGATGGGGACAAGGGGCCTCGAGGAAAACCAGGAGATATGGGGCCGGCTGGTCCTCAAGGACCCCCA
GGAAAGGATGGGCCTCCAGGAATGAAGGGAGAAGTCGGACCCCCAGGAAGTCCAGGGGAGAAAGGGGAGA
CAGGACAAGCAGGCCCCCAGGGAGAGAAAGGAGAAGCTGGGGAGAAAGGCGACCCGGGAGCAGAGGTTCC
TGGGCCGCCAGGGCCAGAGGGTCCTCCAGGACCTCCGGGCCTCCAAGGTTTTCCTGGACCAAAGGGAGAA
GCAGGCCTAGAGGGCAGTAAAGGAGAGAAGGGCTCCCAGGGAGAAAAAGGAGACCGGGGGCCTCTGGGAT
TGCCTGGTACTCCAGGACCAATCGGGGTTCCAGGCCCAGCCGGACCAAAGGGCGAAAGGGGCAGCAAAGG
CGACCCAGGGATGACGGGACCAACGGGAGCAGCTGGGCTGCCTGGTTTACATGGACCACCCGGGGACAAA
GGAAACCGGGGGGAGAGGGGGAAGAAGGGCTCTAGAGGGCCTAAAGGGGACAAGGGGGACCAAGGAGCAC
CTGGACTAGACGCCCCCTGCCCGCTGGGAGAAGATGGCTTACCAGTCCAAGGCTGCTGGAACAAGTGA

Translation (675 aa):
MVAERTRKAAASGSRGPGELGAPGPGTVALAEQCARLPSPGCCGLLALALCSLALSLLAHFRTAELQARV
LRLEAERGEQQMEKAILGRVNQLLDEKWKFYSRRRREAPKMSPGCNCPPGPPGPTGRPGLPGDKGAIGMP
GRVGAPGDAGMSIVGPRGPPGQPGTRGFPGFPGPIGLDGRPGHPGPKGEMGLVGPRGQPGPQGQKGEKGQ
CGEYPHREYPGGMLAALRSNPIMSLKGEQSQTGIQGPPGPPGPPGPSGPLGHPGLPGPIGPPGLPGPPGP
KGDPGIQGYHGRKGERGMPGMPGKHGAKGVPGIAVAGMKGEPGTPGTKGEKGAAGSPGLLGQKGEKGDAG
NAIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGQQGDKGQPGAAGEQGPSGPKGAKGEPGKGEMVDYN
GSINEALQEIRTLALMGPPGLPGQTGPPGPPGTPGQRGEIGLPGPPGHDGDKGPRGKPGDMGPAGPQGPP
GKDGPPGMKGEVGPPGSPGEKGETGQAGPQGEKGEAGEKGDPGAEVPGPPGPEGPPGPPGLQGFPGPKGE
AGLEGSKGEKGSQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDK
GNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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