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Report for CCDS78641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78641.1 Public Mus musculus 1 2810459M11Rik 23 108 98 CCDS HistoryNCBI Gene:72792Re-query CCDS DB by CCDS ID:78641.1Re-query CCDS DB by GeneID:72792See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027429.10 ENSMUSP00000027429.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027429.10Link to Ensembl Protein Viewer:ENSMUSP00000027429.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027429Re-query CCDS DB by Protein ID:ENSMUSP00000027429
Original member NCBI NM_001144993.1 NP_001138465.1 Updated not alive Link to Nucleotide Sequence:NM_001144993.1Link to Protein Sequence:NP_001138465.1Re-query CCDS DB by Nucleotide ID:NM_001144993Re-query CCDS DB by Protein ID:NP_001138465
Current member NCBI NM_001144993.2 NP_001138465.1 Accepted alive Link to Nucleotide Sequence:NM_001144993.2Link to Protein Sequence:NP_001138465.1Re-query CCDS DB by Nucleotide ID:NM_001144993Re-query CCDS DB by Protein ID:NP_001138465Link to BLAST:NP_001138465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138465.1 286 Q9CYS6-1 286 100% 0 0

Chromosomal Locations for CCDS 78641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86045963 86046572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86048591 86048701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86052950 86053089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGAGAGCGAGCTGGAGGCGCTGGCCCCGCGGCCCGCGAGCCCGGCGGAGCCACCCTTCCAGGCGTTGG
TGGAGGCGGCGGGTGGCCGCGGGCAGGTGCTGCTGGTGGGCGAGCTGTGGGAGCGCGAGCAGAGCCGCGC
GCTGCTGAGGGACTTCGCCGGTGCCGTGTTCCCGCCGGAGTCCGCGCCGGGCAAGCCGGGCTGCGCAGAG
GCCGAGAGCGCGGGCACCGCGGCGGCCACCGAGTCGCACGGGGCTCCGGGGGCGAAGGCGGAGCGAGCCA
TTCGCTCGCCGCTCGTTTTCGTGCTGTGCCGCGTCGGATCGCTGACCTCCCGGGAGTCGCGGCGCCGCCT
GCGGGAGATGCTGCGGGACGTGCGCGACCGGAGGTGTGAGGGCGCCGCGCTGGTCGGAGTGCTGGTGGCC
GACACGGGTGCGGATGACGCGAGGGCGCCCGAACTGCAGCTGCTCGAGACGCTGCTGCGCACGGTGTTCG
GCCGCCAGGTCGGGGGCCCGGTGCAAGCAGCAGCCTTTCGTCCCGGCTGTCCCGCCTCCAGCCTGGCGGT
CCAGGAGGCGGCCTGCAGAGCCCTGCAAGCTGCGGGGCCGGGACGACCAGAAGGTGCCTGGGAAAGACCT
GCCCGCACTGGCCTACTGACTTGCTTCTCCTGGGGTCCTCGGAGGCAGAGGAAGAACCGAGGTGTCACCT
CCTCTCAAGGCCCAGCTCAAGAACACCTCCAGTTCTCGGAAGAGGAGCTTGCACTGACACCTGTATTTCC
CAATGGAGACTGTGAAGACCGTGGAAATGGATCTAGAGCCCAGGATGGTGGTGTCCACATCCCACCTGAC
CCCCCAGAGGACACAAGATGA

Translation (286 aa):
MESELEALAPRPASPAEPPFQALVEAAGGRGQVLLVGELWEREQSRALLRDFAGAVFPPESAPGKPGCAE
AESAGTAAATESHGAPGAKAERAIRSPLVFVLCRVGSLTSRESRRRLREMLRDVRDRRCEGAALVGVLVA
DTGADDARAPELQLLETLLRTVFGRQVGGPVQAAAFRPGCPASSLAVQEAACRALQAAGPGRPEGAWERP
ARTGLLTCFSWGPRRQRKNRGVTSSQGPAQEHLQFSEEELALTPVFPNGDCEDRGNGSRAQDGGVHIPPD
PPEDTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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