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Report for CCDS78565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78565.1 Public Mus musculus 1 Ankrd39 23 108 98 CCDS HistoryNCBI Gene:109346Re-query CCDS DB by CCDS ID:78565.1Re-query CCDS DB by GeneID:109346See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194894.3 ENSMUSP00000141712.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194894.3Link to Ensembl Protein Viewer:ENSMUSP00000141712.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194894Re-query CCDS DB by Protein ID:ENSMUSP00000141712
Original member Current member NCBI NM_001310533.1 NP_001297462.1 Accepted alive Link to Nucleotide Sequence:NM_001310533.1Link to Protein Sequence:NP_001297462.1Re-query CCDS DB by Nucleotide ID:NM_001310533Re-query CCDS DB by Protein ID:NP_001297462Link to BLAST:NP_001297462.1

Chromosomal Locations for CCDS 78565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36539474 36539534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36541824 36542062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36542762 36542865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36547086 36547185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCGGCGCCGCACCTTTGCGCGGATGGCTCCTGCTGCTCTCACCCTAGTGCGGTGCCCGGGGTACAGC
AGACGCTGGAGGAGATGGACTTCGACAGGGGAATCTGGTCGGCTGCCCTGAATGGAGACCTGGGCCGTGT
GAAGTATTTCATCCAGAAGGCCACAGACCCTAGCCAGCCAGATTCTGCCGGCTACACCGCACTGCACTAC
GCCAGCCGCAACGGGCACTATGCTGTTTGCCAGTTTCTGCTGGAAAGTGGAGCGAAGTGTGACGCCCAGA
CCCACGGGGGCGCCACGGCTTTGCACCGGGCCAGCTACTGTGGGCACACGGAAATCGCACGGCTGCTGCT
ATCCCATGGGTCCAACCCCTGGCTGGTCGACAATGATGGCATGACCAGTCTGCATAAGGTGTGTATGTCG
CTGCCTCCCTCAGCCTGCATAAGGCTGCGGAGAAGGGTCACGAGGACATTTGCTCCCTCCTGTTACAACA
CAGCCCAGCCCTGA

Translation (167 aa):
MAAPHLCADGSCCSHPSAVPGVQQTLEEMDFDRGIWSAALNGDLGRVKYFIQKATDPSQPDSAGYTALHY
ASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHGSNPWLVDNDGMTSLHKVCMS
LPPSACIRLRRRVTRTFAPSCYNTAQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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