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Report for CCDS78560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78560.1 Public Mus musculus 1 Arid5a 23 108 98 CCDS HistoryNCBI Gene:214855Re-query CCDS DB by CCDS ID:78560.1Re-query CCDS DB by GeneID:214855See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097778.8 ENSMUSP00000095385.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097778.8Link to Ensembl Protein Viewer:ENSMUSP00000095385.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097778Re-query CCDS DB by Protein ID:ENSMUSP00000095385
Original member Current member NCBI NM_001290726.1 NP_001277655.1 Accepted alive Link to Nucleotide Sequence:NM_001290726.1Link to Protein Sequence:NP_001277655.1Re-query CCDS DB by Nucleotide ID:NM_001290726Re-query CCDS DB by Protein ID:NP_001277655Link to BLAST:NP_001277655.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277655.1 619 Q3U108-2 619 99.8384% 0 1

Chromosomal Locations for CCDS 78560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36311878 36311968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36316209 36316327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36317204 36317324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36317610 36317662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318084 36318181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318488 36318653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318992 36320203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGTTGAAGGGAGGCAGGCCTGACCTCTGTGTGGTGAACTCTCTCATCGAGCTCCAGAAGCTAAAACTAC
ACGTGGACGCAGAGCACCAGACAGCACCTCCGGCCAAAGGGAACACAGAGCAGTCAGAAGAAGGTGACCT
CCCGCAGCTTCCTGTATCCCCCAAGCCAGATGATGAGCAGAGCAGGAGCCAGAGCCCCACCCAGCTCCAG
GACTCCCCTGAGGCAGGTGGGGAGCAGGAGGAGGAACAGGCCTTCCTGGTCAGCCTCTACAAGTTCATGA
AGGAGCGACACACGCCCATCGAGAGGGTGCCCCATCTTGGCTTCAAGCAGATTAACCTGTGGAAGATCTA
CAAGGCAGTGGAGAAGCTGGGGGCCTATGAGCTGGTGACAGGCCGCCGCCTCTGGAAGAACGTGTATGAT
GAACTTGGCGGTAGCCCAGGCAGCACCAGTGCGGCCACATGCACACGCCGCCACTATGAGAGGCTGGTCC
TCCCATATGTGCGGCATCTGAAGGGGGAGGACGACAAGCCACTGCCTCCTACCAAGCCCAGGAAGCAATA
CAAGATGGCCAAGGAGCTGAGGGGAGACGATGGGACCACTGAGAAGCTGAAGAAGGCCAAGGACTCAGAG
GAGAGGCGGGTGGAGCAGACCACGCCAGGAAAGACCAAATCAGATGCCACTGGCCAGACACAGCTTCCCT
GCCAGGGATCCTCGAGGGACAGCACAGAACAGCTGGGCCCAGTATCTGGACCCTCTCCACCACTCACGGG
TGCTAGTAGCTGCCCTGAGGCCTACAAGCGGCTCTTGTCAAGCTTTTACTGCAAAGGGGCGCATGGCATC
ATGTCACCACTGGCCAAAAAGAAACTCCTGGCCCAGGTCAGCAAGGCAGAGGCCTTGCAGTGCCAAGAAG
AGGGCTGTCGCCATGGAGCAAGGAGCCCCAACAAGGACATTCAAGACAGTCCCCAGAACCTAAGAGGGCC
GGCTGAGAACTCTGAACACCAGCTAACCCCCCGGGAAGGATTGCAGGCCCCTGGTGGGAGCACCAGGATG
GAGGCCCAAGTGGGCCCCTGCCCTACAGCCCCCATGTTCTCAGGCTGTTTTCATGCGTACCCCACCGAGG
TGCTGAAACCTGTCAGCCAGCACCCTAGGGACTTCTTCTCCGGCCTTAAAGACAGGGTGCTGTTGGGACC
ACCTGGTAAAGAAGAAGGTCCGACAACCAAAGAGTCCCATCTGGTGTGGGGTGGGGATGCCAACCACCCC
TCTGCATTCCATAAAGGCAGCACAAGAAAAAGAAGTTTCTACCCCAAACCCAAAGCCTGCTGGGTGTCTC
CCATGGCCAAGGTCCCTACTGAGAGGCCTGGAGCCCCATCCCCTCATCCCAGTAGCCCAGGTCTTGGCAG
TAAGCGCGGCTTGGAAGAAGAGGGATTCGCTCATGGTGGCAAGAAACTGAGGGCAGTGTCTCCCTTTCTG
AAGGAGGTGGATTCCAAGGAGACTGGGGGCAAGCCTGCAGCCCCTGGCTTGGCTGTATCCTGTCTACTGG
GCCCAACCCCGGGGCCCACTCCTCCAGAGGCCTACAGGGGCACCATGCTGCGGTGTCCTCTAAACTTCAC
CGGTAGCGCAGACCCTCTGAAGGGCCAGGCCTCACTCCCCTTCAGCCCCCTGGTCATCCCTGCTTTCCCA
GCCCACCTTCTGGCTACAACAGGCTCCTCACCTATGGCTGCCAGCCTGATGCATTTCCCTCCCACGCCCT
ATGACGCTGTCCTACGCAACAGACTGGGTCCAGCTTCGTCTGCCTGGCACATGCCACCCGTCACAACCTA
TGCGGCACCTCACTTCTTCCACCTCAACACCAAACTGTAG

Translation (619 aa):
MLKGGRPDLCVVNSLIELQKLKLHVDAEHQTAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQ
DSPEAGGEQEEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYD
ELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSE
ERRVEQTTPGKTKSDATGQTQLPCQGSSRDSTEQLGPVSGPSPPLTGASSCPEAYKRLLSSFYCKGAHGI
MSPLAKKKLLAQVSKAEALQCQEEGCRHGARSPNKDIQDSPQNLRGPAENSEHQLTPREGLQAPGGSTRM
EAQVGPCPTAPMFSGCFHAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGPTTKESHLVWGGDANHP
SAFHKGSTRKRSFYPKPKACWVSPMAKVPTERPGAPSPHPSSPGLGSKRGLEEEGFAHGGKKLRAVSPFL
KEVDSKETGGKPAAPGLAVSCLLGPTPGPTPPEAYRGTMLRCPLNFTGSADPLKGQASLPFSPLVIPAFP
AHLLATTGSSPMAASLMHFPPTPYDAVLRNRLGPASSAWHMPPVTTYAAPHFFHLNTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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