NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7828.1 Public Homo sapiens 11 SERGEF 24 110 108 CCDS HistoryNCBI Gene:26297Re-query CCDS DB by CCDS ID:7828.1Re-query CCDS DB by GeneID:26297See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265965.10 ENSP00000265965.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265965.10Link to Ensembl Protein Viewer:ENSP00000265965.5Re-query CCDS DB by Nucleotide ID:ENST00000265965Re-query CCDS DB by Protein ID:ENSP00000265965
Original member Current member NCBI NM_012139.4 NP_036271.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012139.4Link to Protein Sequence:NP_036271.1Re-query CCDS DB by Nucleotide ID:NM_012139Re-query CCDS DB by Protein ID:NP_036271Link to BLAST:NP_036271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036271.1 458 Q9UGK8-1 458 100% 0 0

Chromosomal Locations for CCDS 7828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 17788085 17788413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17878208 17878244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17959470 17959636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17988597 17988755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17992931 17992993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17995796 17995909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18000497 18000557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18004441 18004535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18006591 18006746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18007941 18008076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18012951 18013010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGAGCGCGAGCCCAGCGCCTCGGAGGCCGCCCCCGCGGCGGCCGCGCTCTTCGCCTGGGGTGCAAATA
GCTATGGGCAACTTGGCCTCGGCCATAAGGAAGATGTGCTGTTGCCCCAGCAACTGAATGACTTCTGTAA
ACCCAGGAGTGTCAGGAGGATCACAGGAGGAGGGGGCCACTCTGCAGTTGTCACAGATGGAGGAGACCTC
TTTGTTTGTGGCCTGAACAAAGATGGGCAACTGGGGCTTGGTCACACAGAGGATATCCCATATTTTACCC
CCTGCAAATCCCTCTTTGGCTGTCCCATCCAACAGGTGGCCTGTGGCTGGGATTTTACGATTATGCTCAC
AGAAAATGGTCAAGTTCTATCATGTGGATCCAACTCCTTTGGCCAGTTAGGAGTTCCTCATGGACCTCGA
AGATGTGTGGTTCCCCAGGCCATTGAGCTCCATAAAGAGAAGGTTGTTTGTATTGCTGCTGGACTGAGGC
ATGCAGTAGCTGCTACAGCGAGTGGCATCGTGTTCCAGTGGGGGACTGGTTTGGCATCATGTGGACGACG
GTTGTGCCCTGGGCAGACTCTTCCATTGTTTTTCACAGCAAAGGAACCAAGCAGAGTGACAGGTCTAGAG
AATTCTAAAGCAATGTGTGTTCTTGCTGGCTCAGACCACTCAGCTTCATTAACAGATGCAGGAGAGGTGT
ATGTTTGGGGAAGCAACAAGCATGGGCAACTGGCTAATGAGGCTGCTTTCCTTCCTGTGCCCCAGAAAAT
AGAAGCACATTGTTTCCAGAATGAAAAGGTCACTGCCATCTGGAGTGGATGGACACACCTGGTTGCTCAG
ACAGAAACTGGCAAGATGTTTACCTGGGGCCGAGCAGACTATGGTCAGCTAGGGAGGAAGTTGGAGACTT
ATGAAGGCTGGAAACTAGAAAAGCAAGATTCATTTCTCCCCTGTTCAAGACCACCGAACAGCATGCCTTC
GTCTCCGCATTGCTTAACTGGAGCAACTGAGGTCTCTTGTGGCTCAGAGCATAATTTGGCAATAATTGGT
GGAGTGTGTTACTCTTGGGGCTGGAATGAGCATGGCATGTGCGGAGATGGCACTGAAGCCAACGTCTGGG
CCCCAAAGCCGGTGCAGGCTCTGCTGTCATCGTCAGGACTCCTTGTGGGCTGTGGGGCTGGCCACTCCTT
GGCCCTCTGCCAGCTGCCAGCTCACCCTGCATTGGTCCAGGACCCCAAGGTCACCTACCTTTCCCCAGAT
GCCATCGAGGACACTGAATCTCAGAAAGCCATGGACAAAGAGAGAAACTGGAAGGAAAGACAATCAGAAA
CTTCAACCCAAAGCCAATCTGACTGGTCCAGAAATGGGGGACTGTGA

Translation (458 aa):
MEREPSASEAAPAAAALFAWGANSYGQLGLGHKEDVLLPQQLNDFCKPRSVRRITGGGGHSAVVTDGGDL
FVCGLNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPR
RCVVPQAIELHKEKVVCIAAGLRHAVAATASGIVFQWGTGLASCGRRLCPGQTLPLFFTAKEPSRVTGLE
NSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQ
TETGKMFTWGRADYGQLGRKLETYEGWKLEKQDSFLPCSRPPNSMPSSPHCLTGATEVSCGSEHNLAIIG
GVCYSWGWNEHGMCGDGTEANVWAPKPVQALLSSSGLLVGCGAGHSLALCQLPAHPALVQDPKVTYLSPD
AIEDTESQKAMDKERNWKERQSETSTQSQSDWSRNGGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH