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Report for CCDS78265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78265.1 Public Homo sapiens 7 SPDYE6 24 110 108 CCDS HistoryNCBI Gene:729597Re-query CCDS DB by CCDS ID:78265.1Re-query CCDS DB by GeneID:729597See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 78265.1
This CCDS representation lacks full-length human transcript support. Its representation is therefore inferred, but it is supported by paralogous transcripts.

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 78265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000563237.3 ENSP00000485230.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563237.3Link to Ensembl Protein Viewer:ENSP00000485230.1Re-query CCDS DB by Nucleotide ID:ENST00000563237Re-query CCDS DB by Protein ID:ENSP00000485230
Original member Current member NCBI NM_001146210.4 NP_001139682.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146210.4Link to Protein Sequence:NP_001139682.2Re-query CCDS DB by Nucleotide ID:NM_001146210Re-query CCDS DB by Protein ID:NP_001139682Link to BLAST:NP_001139682.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139682.2 402 P0CI01 402 100% 0 0

Chromosomal Locations for CCDS 78265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102348102 102348161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102348284 102348677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102350728 102350813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102352066 102352124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102353158 102353388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102354703 102354921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102355864 102356023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGACAGAACGGAGACTAGGTTCCGTAAGAGGGGACAGATTACGGGAAAGATCACGACCAGCCGTCAAC
CGCACCCCCAGAATGAGCAGAGTCCCCAGCGGAGCACCTCGGGGTACCCCCTCCAGGAGGTGGTGGATGA
TGAAATGTTGGGACCATCAGCCCCTGGGGTAGATCCCAGCCCCCCATGTAGGTCCCTTGGCTGGAAAAGG
AAGAGGGAGTGGTCAGATGAATCTGAGGAGGAGCCGGAGAAGGAGCTCGCCCCTGAGCCTGAGGAGACCT
GGGTAGTGGAGATGCTGTGTGGGCTCAAGATGAAGCTGAAGCAACAGCGAGTGTCATCCATCCTCCCTGA
GCACCACAAGGACTTCAACAGTCAGCTTGCCCCTGGGGTAGATCCCAGCCCCCCGCATAGGTCCTTTTGC
TGGAAAAGGAAGATGGAGTGGTGGGACGAATCTGAGGAGTCGTTGGAGGAGGAGCCACGGAAGGTGCTCG
CCCCTGAGCCTGAGGAGATCTGGGTGGCGGAGATGCTGTGTGGCCTCAAGATGAAGCTGAAGCGACGGCG
AGTGTCGCTCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTGCTTGAGGATCCTGTCATTAAAAGA
TTCTTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTCA
GCCGGGCTGGCTTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTACCTGGCCAATGA
CATGGAGGAGGACGACGAGGACTCCAAACAAAACATCTTCCACTTCCTGTATAGGAAGAACCGCTCTCGC
ATACCCTTGCTCCGTAAGCGTTGGTTCCAGTTAGGCCATTCCATGAACCCGAGGGCCAGGAAGAACCGCT
CTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCACGAACCCGAGGGCCAGGAAGAA
CCGCTCTCGCATACCCTTGCTCCGTAAGCATCGGTTCCAGTTATACCGTTCCATGAACTCGAGGGCCAGG
AAGAACCGCTCTCAGATAGTCCTGTTCCAGAAACGACGGTTCCACTTCTTCTGTTCCATGAGCTGCAGGG
CTTGGGTTTCCCCAGAGGAGTTGGAGGAGATCCAGGCTTATGACCCAGAGCACTGGGTGTGGGCGCGAGA
TCGCGCTCACCTTTCCTAG

Translation (402 aa):
MDRTETRFRKRGQITGKITTSRQPHPQNEQSPQRSTSGYPLQEVVDDEMLGPSAPGVDPSPPCRSLGWKR
KREWSDESEEEPEKELAPEPEETWVVEMLCGLKMKLKQQRVSSILPEHHKDFNSQLAPGVDPSPPHRSFC
WKRKMEWWDESEESLEEEPRKVLAPEPEEIWVAEMLCGLKMKLKRRRVSLVLPEHHEAFNRLLEDPVIKR
FLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLANDMEEDDEDSKQNIFHFLYRKNRSR
IPLLRKRWFQLGHSMNPRARKNRSRIPLLRKRRFQLYRSTNPRARKNRSRIPLLRKHRFQLYRSMNSRAR
KNRSQIVLFQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRAHLS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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