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Report for CCDS77846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77846.1 Public Homo sapiens 3 SSR3 24 110 108 CCDS HistoryNCBI Gene:6747Re-query CCDS DB by CCDS ID:77846.1Re-query CCDS DB by GeneID:6747See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77846.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000467789.5 ENSP00000420641.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000467789.5Link to Ensembl Protein Viewer:ENSP00000420641.1Re-query CCDS DB by Nucleotide ID:ENST00000467789Re-query CCDS DB by Protein ID:ENSP00000420641
Original member Current member NCBI NM_001308197.2 NP_001295126.1 Accepted alive Link to Nucleotide Sequence:NM_001308197.2Link to Protein Sequence:NP_001295126.1Re-query CCDS DB by Nucleotide ID:NM_001308197Re-query CCDS DB by Protein ID:NP_001295126Link to BLAST:NP_001295126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295126.1 198 Q9UNL2-2 198 100% 0 0

Chromosomal Locations for CCDS 77846.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 156543203 156543269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156544308 156544439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156548866 156549003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156553655 156553781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156554957 156555089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCTCCTAAAGGCAGCTCCAAACAGCAGTCTGAGGAGGACCTGCTCCTGCAGGATTTCAGCCGCAATC
TCTCGGCCAAGTCCTCCGCGCTCTTCTTCGGAAACGCGTTCATCGTGTCTGCCATCCCCATCTGGTTATA
CTGGCGAATATGGCATATGGATCTTATTCAGTCTGCTGTTTTGTATAGTGTGATGACCCTAGTAAGCACA
TATTTGGTAGCCTTTGCATACAAGAATGTGAAATTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAGG
ATGCTGTTTCCAAAGAAGTGACTCGAAAACTTTCTGAAGCTGATAATAGAAAGATGTCTCGGAAGGAGAA
AGATGAAAGGTTTGACTCCTGTTTAAAGTATGGCCATCATAAAAGGGGAATCTTGTGGAAGAAGAATGAA
GTTGCTGATTATGAAGCTACAACATTTTCCATCTTCTATAACAACACTCTGTTCCTGGTCGTGGTCATTG
TTGCTTCCTTCTTCATATTGAAGAACTTCAACCCCACAGTGAACTACATATTGTCCATAAGTGCTTCATC
AGGACTCATCGCCCTCCTGTCTACTGGCTCCAAATAG

Translation (198 aa):
MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVST
YLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERFDSCLKYGHHKRGILWKKNE
VADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGSK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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