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Report for CCDS77169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77169.1 Public Homo sapiens 18 PSMA8 24 110 108 CCDS HistoryNCBI Gene:143471Re-query CCDS DB by CCDS ID:77169.1Re-query CCDS DB by GeneID:143471See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 77169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612461.1 ENSP00000482057.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612461.1Link to Ensembl Protein Viewer:ENSP00000482057.1Re-query CCDS DB by Nucleotide ID:ENST00000612461Re-query CCDS DB by Protein ID:ENSP00000482057
Original member Current member NCBI NM_001308188.2 NP_001295117.1 Accepted alive Link to Nucleotide Sequence:NM_001308188.2Link to Protein Sequence:NP_001295117.1Re-query CCDS DB by Nucleotide ID:NM_001308188Re-query CCDS DB by Protein ID:NP_001295117Link to BLAST:NP_001295117.1

Chromosomal Locations for CCDS 77169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 26140086 26140109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26144559 26144685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26151858 26151982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26158122 26158244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26178830 26178949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26179068 26179130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26192319 26192411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGATGTCTGCACATTTGAAAAAGTCGGAATTCGAGGTACCAATATAGTTGTTCTTGGGGTAGAAAAAA
AATCTGTTGCCAAGCTTCAAGATGAAAGAACTGTGAGGAAAATTTGTGCCCTTGATGACCATGTCTGCAT
GGCTTTTGCAGGACTTACTGCTGATGCTAGAGTAGTAATAAACAGAGCCCGTGTGGAGTGCCAGAGCCAT
AAGCTTACGGTTGAGGACCCAGTCACTGTAGAATACATAACTCGCTTCATAGCAACTTTAAAGCAGAAAT
ATACCCAAAGCAATGGACGAAGACCTTTTGGTATTTCTGCCTTAATTGTAGGTTTTGATGATGATGGTAT
CTCAAGATTGTATCAGACAGATCCTTCTGGTACTTATCATGCTTGGAAGGCAAATGCAATAGGCCGAAGT
GCTAAAACTGTTCGAGAATTTCTAGAAAAGAATTACACAGAAGATGCCATAGCAAGTGACAGTGAAGCTA
TCAAGTTAGCAATAAAAGCTTTGCTAGAAGTTGTCCAGTCTGGTGGAAAAAACATTGAACTTGCTATAAT
AAGAAGAAATCAACCTTTGAAGATGTTTAGTGCAAAAGAAGTTGAATTATATGTAACTGAAATAGAAAAG
GAAAAGGAAGAAGCAGAGAAGAAAAAATCAAAGAAATCTGTCTAA

Translation (224 aa):
MDVCTFEKVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSH
KLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRS
AKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEK
EKEEAEKKKSKKSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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