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Report for CCDS7707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7707.1 Public Homo sapiens 11 CDHR5 24 110 108 CCDS HistoryNCBI Gene:53841Re-query CCDS DB by CCDS ID:7707.1Re-query CCDS DB by GeneID:53841See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7707.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397542.7 ENSP00000380676.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397542.7Link to Ensembl Protein Viewer:ENSP00000380676.2Re-query CCDS DB by Nucleotide ID:ENST00000397542Re-query CCDS DB by Protein ID:ENSP00000380676
Original member Current member EBI ENST00000674088.1 ENSP00000501074.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674088.1Link to Ensembl Protein Viewer:ENSP00000501074.1Re-query CCDS DB by Nucleotide ID:ENST00000674088Re-query CCDS DB by Protein ID:ENSP00000501074
Original member Current member NCBI NM_021924.5 NP_068743.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021924.5Link to Protein Sequence:NP_068743.3Re-query CCDS DB by Nucleotide ID:NM_021924Re-query CCDS DB by Protein ID:NP_068743Link to BLAST:NP_068743.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068743.3 845 Q9HBB8-1 845 100% 0 0

Chromosomal Locations for CCDS 7707.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 617351 617770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 617954 618111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 618599 619180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 619306 619390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 619474 619587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 619681 619881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 620067 620164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 620296 620386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 621080 621250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 621345 621455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 621562 621663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 621812 621904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 624213 624263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 624557 624732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 624818 624902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGGGGTCTTGGGCCCTGCTGTGGCCTCCCCTGCTGTTCACCGGGCTGCTCGTCCGACCCCCGGGGACCA
TGGCCCAGGCCCAGTACTGCTCTGTGAACAAGGACATCTTTGAAGTAGAGGAGAACACAAATGTCACCGA
GCCGCTGGTGGACATCCACGTCCCGGAGGGCCAGGAGGTGACCCTCGGAGCCTTGTCCACCCCCTTTGCA
TTTCGGATCCAGGGAAACCAGCTGTTTCTCAACGTGACTCCTGATTACGAGGAGAAGTCACTGCTTGAGG
CTCAGCTGCTGTGTCAGAGCGGAGGCACATTGGTGACCCAGCTAAGGGTGTTCGTGTCAGTGCTGGACGT
CAATGACAATGCCCCCGAATTCCCCTTTAAGACCAAGGAGATAAGGGTGGAGGAGGACACGAAAGTGAAC
TCCACCGTCATCCCCGAGACGCAACTGCAGGCTGAGGACCGCGACAAGGACGACATTCTGTTCTACACCC
TCCAGGAAATGACAGCAGGTGCCAGTGACTACTTCTCCCTGGTGAGTGTAAACCGTCCCGCCCTGAGGCT
GGACCGGCCCCTGGACTTCTACGAGCGGCCGAACATGACCTTCTGGCTGCTGGTGCGGGACACTCCGGGG
GAGAATGTGGAACCCAGCCACACTGCCACCGCCACACTAGTGCTGAACGTGGTGCCCGCCGACCTGCGGC
CCCCGTGGTTCCTGCCCTGCACCTTCTCAGATGGCTACGTCTGCATTCAAGCTCAGTACCACGGGGCTGT
CCCCACGGGGCACATACTGCCATCTCCCCTCGTCCTGCGTCCCGGACCCATCTACGCTGAGGACGGAGAC
CGCGGCATCAACCAGCCCATCATCTACAGCATCTTTAGGGGAAACGTGAATGGTACATTCATCATCCACC
CAGACTCGGGCAACCTCACCGTGGCCAGGAGTGTCCCCAGCCCCATGACCTTCCTTCTGCTGGTGAAGGG
CCAACAGGCCGACCTTGCCCGCTACTCAGTGACCCAGGTCACCGTGGAGGCTGTGGCTGCGGCCGGGAGC
CCGCCCCGCTTCCCCCAGAGACTGTATCGTGGCACCGTGGCGCGTGGCGCTGGAGCGGGCGTTGTGGTCA
AGGATGCAGCTGCCCCTTCTCAGCCTCTGAGGATCCAGGCTCAGGACCCGGAGTTCTCGGACCTCAACTC
GGCCATCACATATCGAATTACCAACCACTCACACTTCCGGATGGAGGGAGAGGTTGTGCTGACCACCACC
ACACTGGCACAGGCGGGAGCCTTCTACGCAGAGGTTGAGGCCCACAACACGGTGACCTCTGGCACCGCAA
CCACAGTCATTGAGATACAAGTTTCCGAACAGGAGCCCCCCTCCACAGATGTCCCCCCATCCCCAGAGGC
TGGAGGAACAACTGGGCCCTGGACCAGCACCACTTCCGAGGTCCCCAGACCCCCTGAGCCCTCCCAGGGA
CCCTCCACGACCAGCTCTGGGGGAGGCACAGGCCCTCATCCACCCTCTGGCACAACTCTGAGGCCACCAA
CCTCGTCCACACCCGGGGGGCCCCCGGGTGCAGAAAACAGCACCTCCCACCAACCAGCCACTCCCGGTGG
GGACACAGCACAGACCCCAAAGCCAGGAACCTCTCAGCCGATGCCCCCCGGTGTGGGAACCAGCACCTCC
CACCAACCAGCCACACCCAGTGGGGGCACAGCACAGACCCCAGAGCCAGGAACCTCTCAGCCGATGCCCC
CCAGTATGGGAACCAGCACCTCCCACCAACCAGCCACACCCGGTGGGGGCACAGCACAGACCCCAGAGGC
AGGAACCTCTCAGCCGATGCCCCCCGGTATGGGAACCAGCACCTCCCACCAACCAACCACACCCGGTGGG
GGCACAGCACAGACCCCAGAGCCAGGAACCTCTCAGCCGATGCCCCTCAGCAAGAGCACCCCATCTTCAG
GTGGCGGCCCCTCGGAGGACAAGCGCTTCTCGGTGGTGGATATGGCGGCCCTGGGCGGGGTGCTGGGTGC
GCTGCTGCTGCTGGCTCTCCTTGGCCTCGCCGTCCTTGTCCACAAGCACTATGGCCCCCGGCTCAAGTGC
TGCTGTGGCAAAGCTCCGGAGCCCCAGCCCCAAGGCTTTGACAACCAGGCGTTCCTCCCTGACCACAAGG
CCAACTGGGCGCCCGTCCCCAGCCCCACGCACGACCCCAAGCCCGCGGAGGCACCGATGCCCGCAGAGCC
CGCACCCCCCGGCCCTGCCTCCCCAGGCGGTGCCCCTGAGCCCCCCGCAGCGGCCCGAGCTGGCGGAAGC
CCCACGGCGGTGAGGTCCATCCTGACCAAGGAGCGGCGGCCGGAGGGCGGGTACAAGGCTGTCTGGTTTG
GCGAGGACATCGGGACGGAGGCAGACGTGGTCGTTCTCAACGCGCCCACCCTGGACGTGGATGGCGCCAG
TGACTCCGGCAGCGGCGATGAGGGCGAGGGCGCGGGGAGGGGTGGGGGTCCCTACGATGCGCCCGGTGGT
GATGACTCCTACATCTAA

Translation (845 aa):
MGSWALLWPPLLFTGLLVRPPGTMAQAQYCSVNKDIFEVEENTNVTEPLVDIHVPEGQEVTLGALSTPFA
FRIQGNQLFLNVTPDYEEKSLLEAQLLCQSGGTLVTQLRVFVSVLDVNDNAPEFPFKTKEIRVEEDTKVN
STVIPETQLQAEDRDKDDILFYTLQEMTAGASDYFSLVSVNRPALRLDRPLDFYERPNMTFWLLVRDTPG
ENVEPSHTATATLVLNVVPADLRPPWFLPCTFSDGYVCIQAQYHGAVPTGHILPSPLVLRPGPIYAEDGD
RGINQPIIYSIFRGNVNGTFIIHPDSGNLTVARSVPSPMTFLLLVKGQQADLARYSVTQVTVEAVAAAGS
PPRFPQRLYRGTVARGAGAGVVVKDAAAPSQPLRIQAQDPEFSDLNSAITYRITNHSHFRMEGEVVLTTT
TLAQAGAFYAEVEAHNTVTSGTATTVIEIQVSEQEPPSTDVPPSPEAGGTTGPWTSTTSEVPRPPEPSQG
PSTTSSGGGTGPHPPSGTTLRPPTSSTPGGPPGAENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTS
HQPATPSGGTAQTPEPGTSQPMPPSMGTSTSHQPATPGGGTAQTPEAGTSQPMPPGMGTSTSHQPTTPGG
GTAQTPEPGTSQPMPLSKSTPSSGGGPSEDKRFSVVDMAALGGVLGALLLLALLGLAVLVHKHYGPRLKC
CCGKAPEPQPQGFDNQAFLPDHKANWAPVPSPTHDPKPAEAPMPAEPAPPGPASPGGAPEPPAAARAGGS
PTAVRSILTKERRPEGGYKAVWFGEDIGTEADVVVLNAPTLDVDGASDSGSGDEGEGAGRGGGPYDAPGG
DDSYI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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