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Report for CCDS7688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7688.1 Public Homo sapiens 11 CIMAP1A 24 110 108 CCDS HistoryNCBI Gene:113746Re-query CCDS DB by CCDS ID:7688.1Re-query CCDS DB by GeneID:113746See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325113.9 ENSP00000325868.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325113.9Link to Ensembl Protein Viewer:ENSP00000325868.5Re-query CCDS DB by Nucleotide ID:ENST00000325113Re-query CCDS DB by Protein ID:ENSP00000325868
Original member Current member NCBI NM_053280.5 NP_444510.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053280.5Link to Protein Sequence:NP_444510.2Re-query CCDS DB by Nucleotide ID:NM_053280Re-query CCDS DB by Protein ID:NP_444510Link to BLAST:NP_444510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444510.2 254 Q96PU9-1 254 100% 0 0

Chromosomal Locations for CCDS 7688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 197305 197413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 197561 197761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 198199 198300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 198464 198585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 199369 199509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 199944 200033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGACGGAGGAGGTATGGATGGGTACCTGGAGGCCCCATCGCCCCCGGGGACCCATCATGGCCCTCTACA
GCAGCCCTGGACCCAAGTACCTGATTCCACCAACAACAGGCTTCATGAAGCACACGCCCACCAAGCTGCG
TGCACCGGCCTACAGCTTCCGTGGGGCCCCCATGCTCCTGGCAGAGAACTGCTCCCCAGGGCCCCGTTAC
AATGTAAACCCCAAGATACTGAGGACTGGCAAGGACCTTGGCCCTGCCTACTCCATCCTGGGGCGCTACC
AAACCAAGACCATGCTGACTCCTGGTCCAGGTGACTACTTTCCAGAGAAATCCACCAAGTACGTGTTCGA
CTCAGCACCCAGCCACTCCATCTCTGCCCGGACAAAGGCATTCCGAGTGGACAGCACCCCAGGCCCCGCT
GCGTACATGCTGCCCATGGTAATGGGGCCCAATACCGTCGGCAAGGCCTCCCAGCCCTCCTTTTCCATCA
AGGGCCGCAGCAAGCTGGGCGGCTTCAGCGACGACCTACACAAGACCCCAGGTCCCGCAGCCTACCGCCA
AACTGATGTGCGGGTGACCAAGTTCAAGGCTCCGCAGTACACCATGGCTGCCCGTGTGGAGCCCCCAGGG
GACAAGACCCTCAAGCCAGGACCAGGCGCCCACAGCCCTGAGAAGGTGACCCTGACCAAGCCCTGCGCCC
CAGTTGTCACCTTCGGCATCAAACACTCTGATTACATGACTCCCCTGCTGGTTGATGTGGAATAA

Translation (254 aa):
MTEEVWMGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFMKHTPTKLRAPAYSFRGAPMLLAENCSPGPRY
NVNPKILRTGKDLGPAYSILGRYQTKTMLTPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPA
AYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPG
DKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLVDVE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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