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Report for CCDS76544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76544.1 Public Homo sapiens 12 FGD4 24 110 108 CCDS HistoryNCBI Gene:121512Re-query CCDS DB by CCDS ID:76544.1Re-query CCDS DB by GeneID:121512See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000531134.7 ENSP00000431323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531134.7Link to Ensembl Protein Viewer:ENSP00000431323.1Re-query CCDS DB by Nucleotide ID:ENST00000531134Re-query CCDS DB by Protein ID:ENSP00000431323
Original member NCBI NM_001304481.1 NP_001291410.1 Updated not alive Link to Nucleotide Sequence:NM_001304481.1Link to Protein Sequence:NP_001291410.1Re-query CCDS DB by Nucleotide ID:NM_001304481Re-query CCDS DB by Protein ID:NP_001291410
Current member NCBI NM_001304481.2 NP_001291410.1 Accepted alive Link to Nucleotide Sequence:NM_001304481.2Link to Protein Sequence:NP_001291410.1Re-query CCDS DB by Nucleotide ID:NM_001304481Re-query CCDS DB by Protein ID:NP_001291410Link to BLAST:NP_001291410.1

Chromosomal Locations for CCDS 76544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 32486134 32486143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32564137 32564289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32576266 32576449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32581960 32582467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32598497 32598586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32601278 32601423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32602161 32602317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32607957 32608095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32610776 32610834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32611137 32611283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32619698 32619870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32624422 32624452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32624976 32625068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32625654 32625779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32633549 32633689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32638655 32638795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32640276 32640533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGGGGGGCTGCAGCAGTACCTGTCCAAAGATCGCTTTAGTTCCACCTTGCTCCACAAGCAGCACAACCA
CACTGGTTGGTGAGAATGTATCTGAAGAAGAGGCTCAGGGAATAAATGGGAACAGGCCAGCAAAACACTC
AGCTGCAAGTCCAAAGCCACAAGTGCCTCCAAAGCCATTACACCTGCAGAATTCACCTTCGTCCAATATA
CACCAAACCCCCAGGCATAAAGCTTTACCTAGTGCAAAACCAAGGATGGAGGAAATTAAACCTGCCTCTG
CTTCTTGTGTCTCAAAAGAAAAACCCAGTAAGGTATCAGATCTCATCAGTCGCTTTGAAGGAGGCAGCTC
ATTATCAAATTATAGTGATTTGAAGAAAGAGTCTGCTGTGAACCTAAATGCTCCTAGAACCCCAGGAAGG
CATGGATTGACAACCACACCTCAACAAAAACTCCTCTCCCAGCACTTGCCACAGAGGCAGGGAAATGATA
CAGATAAGACTCAGGGTGCACAGACTTGTGTGGCCAACGGTGTAATGGCAGCACAAAACCAGATGGAATG
TGAGGAGGAGAAAGCTGCCACTCTTAGCTCAGATACTTCTATTCAAGCTTCTGAACCCTTGCTTGATACG
CACATAGTGAATGGAGAAAGAGATGAAACTGCCACAGCTCCTGCATCACCCACAACAGACAGCTGTGATG
GAAATGCTTCTGACAGTAGCTACAGGACTCCAGGCATAGGCCCAGTGCTCCCCCTAGAAGAAAGAGGGGC
AGAAACAGAAACCAAGGTACAAGAGAGGGAAAATGGGGAAAGCCCTCTGGAACTGGAGCAGCTGGACCAG
CACCATGAGATGAAGGAGACTAATGAGCAAAAACTTCACAAAATAGCCAATGAACTTTTGCTTACTGAAA
GAGCTTATGTCAACCGACTTGACCTCTTAGATCAGGTATTTTATTGCAAACTGTTGGAAGAAGCAAACCG
AGGCTCGTTTCCAGCAGAGATGGTGAATAAAATCTTTTCTAATATTTCATCAATAAATGCCTTCCATAGT
AAATTCCTCTTGCCAGAGCTGGAGAAACGAATGCAAGAATGGGAAACTACTCCTAGAATTGGAGACATCC
TTCAGAAATTGGCACCATTCCTTAAGATGTATGGAGAATATGTGAAAGGATTTGATAATGCAATGGAATT
GGTTAAAAACATGACAGAACGTATTCCCCAGTTCAAATCAGTGGTTGAAGAAATTCAGAAACAGAAAATC
TGTGGGAGCTTAACTTTGCAGCATCACATGCTAGAACCTGTTCAGCGGATTCCCCGGTATGAGATGCTCC
TTAAGGACTATCTAAGGAAATTGCCTCCTGATTCCCTGGACTGGAATGATGCTAAAAAATCACTTGAAAT
TATATCTACAGCAGCAAGCCATTCTAATAGTGCAATAAGGAAAATGGAGAACCTAAAGAAACTCTTAGAG
ATTTATGAAATGTTGGGAGAAGAAGAAGACATTGTAAACCCTTCAAATGAACTAATAAAAGAAGGACAGA
TCCTCAAACTAGCTGCTCGGAACACTTCAGCACAAGAACGCTACCTTTTCTTATTCAACAACATGTTGCT
GTACTGTGTGCCCAAATTCAGCTTGGTAGGCTCTAAATTCACAGTTCGAACCAGGGTTGGCATTGATGGA
ATGAAAATTGTAGAGACTCAAAATGAAGAATATCCACATACTTTCCAGGTGTCTGGGAAAGAGAGAACAC
TGGAACTGCAGGCCAGTTCTGCGCAAGACAAAGAAGAATGGATCAAGGCCCTTCAAGAAACCATCGATGC
TTTTCATCAAAGGCATGAAACCTTCAGAAATGCAATTGCAAAGGATAATGACATTCACTCAGAGGTTTCT
ACTGCTGAGCTAGGGAAAAGAGCCCCAAGATGGATCCGAGATAATGAAGTGACAATGTGTATGAAATGTA
AAGAACCTTTCAATGCACTGACACGAAGGAGGCATCATTGTCGAGCATGTGGATATGTGGTTTGTTGGAA
ATGCTCCGACTACAAAGCTCAACTTGAATATGATGGTGGTAAATTGAGCAAAGTTTGTAAAGACTGTTAT
CAAATCATAAGTGGATTCACAGACAGTGAAGAAAAGAAAAGAAAAGGAATTTTAGAGATTGAATCAGCAG
AAGTATCTGGAAACAGTGTGGTGTGCAGCTTTCTTCAGTATATGGAGAAGTCAAAACCTTGGCAGAAAGC
TTGGTGTGTGATCCCCAAGCAAGACCCTCTTGTGCTGTACATGTATGGTGCCCCCCAGGACGTCAGAGCC
CAGGCCACCATTCCACTTCTGGGCTATGTGGTGGATGAAATGCCAAGGAGCGCAGACCTGCCACACAGTT
TCAAACTGACCCAGTCTAAGTCCGTGCACAGCTTTGCTGCAGACAGTGAGGAACTGAAGCAGAAGTGGCT
GAAAGTCATCCTTTTAGCTGTCACAGGTGAGACACCAGGTGGTCCAAATGAGCATCCAGCCACCTTGGAT
GATCATCCTGAACCTAAGAAAAAATCAGAATGCTGA

Translation (851 aa):
MGGCSSTCPKIALVPPCSTSSTTTLVGENVSEEEAQGINGNRPAKHSAASPKPQVPPKPLHLQNSPSSNI
HQTPRHKALPSAKPRMEEIKPASASCVSKEKPSKVSDLISRFEGGSSLSNYSDLKKESAVNLNAPRTPGR
HGLTTTPQQKLLSQHLPQRQGNDTDKTQGAQTCVANGVMAAQNQMECEEEKAATLSSDTSIQASEPLLDT
HIVNGERDETATAPASPTTDSCDGNASDSSYRTPGIGPVLPLEERGAETETKVQERENGESPLELEQLDQ
HHEMKETNEQKLHKIANELLLTERAYVNRLDLLDQVFYCKLLEEANRGSFPAEMVNKIFSNISSINAFHS
KFLLPELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKI
CGSLTLQHHMLEPVQRIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLE
IYEMLGEEEDIVNPSNELIKEGQILKLAARNTSAQERYLFLFNNMLLYCVPKFSLVGSKFTVRTRVGIDG
MKIVETQNEEYPHTFQVSGKERTLELQASSAQDKEEWIKALQETIDAFHQRHETFRNAIAKDNDIHSEVS
TAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGYVVCWKCSDYKAQLEYDGGKLSKVCKDCY
QIISGFTDSEEKKRKGILEIESAEVSGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQDVRA
QATIPLLGYVVDEMPRSADLPHSFKLTQSKSVHSFAADSEELKQKWLKVILLAVTGETPGGPNEHPATLD
DHPEPKKKSEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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