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Report for CCDS76193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76193.1 Public Homo sapiens 1 TSPAN2 24 110 108 CCDS HistoryNCBI Gene:10100Re-query CCDS DB by CCDS ID:76193.1Re-query CCDS DB by GeneID:10100See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76193.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369515.6 ENSP00000358528.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369515.6Link to Ensembl Protein Viewer:ENSP00000358528.2Re-query CCDS DB by Nucleotide ID:ENST00000369515Re-query CCDS DB by Protein ID:ENSP00000358528
Original member Current member NCBI NM_001308315.2 NP_001295244.1 Accepted alive Link to Nucleotide Sequence:NM_001308315.2Link to Protein Sequence:NP_001295244.1Re-query CCDS DB by Nucleotide ID:NM_001308315Re-query CCDS DB by Protein ID:NP_001295244Link to BLAST:NP_001295244.1

Chromosomal Locations for CCDS 76193.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 115050490 115050555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115053379 115053462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115057537 115057608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115058883 115058981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115062135 115062232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115072905 115073007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 115089364 115089432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGGGCGCTTCCGCGGGGGCCTGCGGTGCATCAAGTACCTGCTGCTTGGCTTCAACCTGCTCTTCTGGC
TGGCTGGATCGGCCGTCATTGCTTTTGGACTATGGTTTCGGTTCGGAGGTGCCATAAAGGAGTTATCATC
AGAGGACAAGTCCCCAGAGTATTTCTATGTGGGGCTGTATGTTCTGGTTGGAGCCGGGGCCCTGATGATG
GCCGTGGGGTTCTTCGGGTGCTGCGGAGCCATGCGGGAGTCGCAATGTGTGCTTGGATCAGCTATCCGAC
ATGTTCAGACCATGTATGAAGAGGCTTACAATGATTACCTTAAAGACAGGGGAAAAGGCAATGGGACACT
CATCACCTTCCACTCAACATTTCAGTGCTGTGGAAAAGAAAGCTCCGAACAGGTCCAACCTACATGCCCA
AAGGAGCTTCTAGGACACAAGAATTGCATCGATGAAATTGAGACCATAATCAGTGTTAAGCTCCAGCTCA
TTGGAATTGTCGGTATTGGAATTGCAGGTCTGACGATCTTTGGCATGATATTCAGCATGGTCCTCTGCTG
TGCGATACGAAACTCACGAGATGTGATATGA

Translation (196 aa):
MGRFRGGLRCIKYLLLGFNLLFWLAGSAVIAFGLWFRFGGAIKELSSEDKSPEYFYVGLYVLVGAGALMM
AVGFFGCCGAMRESQCVLGSAIRHVQTMYEEAYNDYLKDRGKGNGTLITFHSTFQCCGKESSEQVQPTCP
KELLGHKNCIDEIETIISVKLQLIGIVGIGIAGLTIFGMIFSMVLCCAIRNSRDVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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