NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75335.1 Public Homo sapiens 5 PCDHGA6 24 110 108 CCDS HistoryNCBI Gene:56109Re-query CCDS DB by CCDS ID:75335.1Re-query CCDS DB by GeneID:56109See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610583.1 ENSP00000479478.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610583.1Link to Ensembl Protein Viewer:ENSP00000479478.1Re-query CCDS DB by Nucleotide ID:ENST00000610583Re-query CCDS DB by Protein ID:ENSP00000479478
Original member Current member NCBI NM_032086.2 NP_114475.1 Accepted alive Link to Nucleotide Sequence:NM_032086.2Link to Protein Sequence:NP_114475.1Re-query CCDS DB by Nucleotide ID:NM_032086Re-query CCDS DB by Protein ID:NP_114475Link to BLAST:NP_114475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114475.1 818 Q9Y5G7-2 818 100% 0 0

Chromosomal Locations for CCDS 75335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141374084 141376540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGGCGCCTCCGCAGAGGCATCCGCAGCGCAGCGAGCAGGTCCTGCTCCTCACGCTCCTGGGGACGCTGT
GGGGGGCCGCGGCAGCGCAGATCCGCTACTCTATTCCCGAGGAGCTGGAGAAAGGCTCCTTCGTAGGCAA
CATCGTCAAGGATCTGGGACTGGAGCCCCAGGAGTTGGCGGAGCACGGAGTCCGCATCGTCTCCAGAGGT
AGGATGCAGCTTTTCTCTCTGAATCCGCGAAACGGCAGCTTGGTCACCGCGGGTAGGATAGACCGCGAGG
AGCTCTGTGCTCAGAGCCCGCGGTGTCTGGTGAGTTTTAACATCCTTGTCGAGGATAAACTGAATCTTTA
TCCCGTGGAAGTGGAAATAGTGGACATTAATGACAATACACCCCGATTCTTAAAGGAAGAATTGGAAGTG
AAAATTCTCGAAAACGCAGCTCCATCCTCTCGTTTTCCACTAATGGAGGTCTATGACCCTGATGTGGGAA
TGAACTCCCTTCAGGGATTTAAGCTCAGTGGTAATAGTCACTTCTCAGTGGACGTGCAAAGCGAAGCCCA
TGGGCCCAAGTACCCGGAGCTGGTGCTGGAGGGCACACTGGACCGGGAAGGAGAAGCCGTTTACCGCCTG
GTCCTTACTGCCATGGATGGCGGCGACCCTGTCCGCTCAAGCGTCGCCCAAATTCTGGTAACAGTTCTAG
ATGTGAATGACAACACTCCAATGTTTACTCAGCCTGTCTACCGTGTAAGTGTTCCTGAAAACCTGCCAGT
AGGCACACCAGTGTTGGCAGTGACTGCCACCGACCAGGATGAAGGAGTCCACGGGGAAGTAACTTATTCC
TTTGTGAAGATTACAGAAAAGATCTCACAAATTTTCTGTTTGAATGTTTTGACTGGAGAAATTTCAACTT
CTGCAAATCTAGACTATGAGGACTCGAGTTTTTATGAGCTGGGTGTTGAAGCCCGGGATGGGCCAGGTCT
TCGAGACAGAGCGAAAGTCTTAATAACTATCTTGGATGTCAATGATAATGTACCAGAAGTGGTTGTTACA
TCTGGAAGCAGAACAATTGCTGAAAGTGCACCTCCAGGAACAGTAATCGCCCTTTTTCAAGTGTTCGATC
GAGACTCTGGCCTGAATGGCCTGGTAACCTGTTCCATCCCGAGAAGTCTCCCATTTGAATTGGAAAAATC
AGTTGGCAATTATTATCGATTAGTGACAAATGCAGCTCTAGACCGGGAAGAGGTATTCTTGTACAACATC
ACTGTGACAGCCACGGACAAAGGAACACCACCTCTGTCTACAGAAACAATCATCTCTCTAAATGTGGCAG
ACACCAACGACAACCCGCCCACCTTCCCCCATTCATCCTACTCAGTCTATGTCCTTGAAAACAACCCCAG
GGGTGCCTCCATCTTCTCTGTGAATGCACTGGACCCTGACGTGGACCAGAACGCCCAAGTCTCCTACTCA
CTGGCAGAAGACACCCTCCAGGGGGCGCCCCTGTCCTCCTACGTGTCCATCAACTCCGACACTGGGATTC
TGTACGCCCTGCGCTCCTTCGACTATGAGCAGTTGAGAGACCTACAGCTGTGGGTGACAGCCAGCGACAG
CGGGGACCCGCCTCTTAGCAGCAACGTGTCACTGAGCCTGTTTGTGCTGGACCAGAATGACAATGCGCCC
GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGCTCCGCAGAGC
CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG
CCTGCTCAAGGCCAGCGAGCCAGGACTTTTCTCAGTGGGCCTGCACACGGGCGAGGTGCGCACGGCGCGC
GCCCTGCTGGACAGAGACGCGCTCAAGCAGAGCCTAGTGGTGGCCGTCCAGGACCACGGCCAGCCCCCTC
TCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGGATCCCCGACATCCTGGCCGACCTGGGCAG
CCTCGAGCCCTCCGCCAAACCCAACGATTCGGACCTCACTCTGTACCTGGTGGTGGCGGTGGCCGCGGTC
TCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGCGCTCAGACTGCAGCGCTGGCACAAGTCACGCC
TGCTGCAGGCTTCGGGAGGTGGCTTAGCGAGCATGCCCGGCTCGCACTTTGTGGGCGTGGAAGGGGTTCG
GGCTTTCCTGCAGACCTATTCCCACGAGGTCTCACTCACTGCAGACTCGCGTAAGAGTCATCTGATTTTC
CCCCAGCCCAACTATGCCGACACGCTTATCAACCAGGAGAGCTATGAGAAAAGCGAGCCTCTTCTGATAA
CTCAGGATTTACTTGAAACGAAAGGAGAACCCAGGCAACTTCAGGTGAGTTTCTTTCCGCCTAAGCGGGA
AGAGTAA

Translation (818 aa):
MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRG
RMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELEV
KILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGTLDREGEAVYRL
VLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYS
FVKITEKISQIFCLNVLTGEISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVT
SGSRTIAESAPPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNI
TVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYS
LAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAP
EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAV
SCVFLAFVIVLLALRLQRWHKSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIF
PQPNYADTLINQESYEKSEPLLITQDLLETKGEPRQLQVSFFPPKREE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH