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Report for CCDS75330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75330.1 Public Homo sapiens 5 PCDHGB1 24 110 108 CCDS HistoryNCBI Gene:56104Re-query CCDS DB by CCDS ID:75330.1Re-query CCDS DB by GeneID:56104See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611598.1 ENSP00000478900.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611598.1Link to Ensembl Protein Viewer:ENSP00000478900.1Re-query CCDS DB by Nucleotide ID:ENST00000611598Re-query CCDS DB by Protein ID:ENSP00000478900
Original member Current member NCBI NM_032095.1 NP_115266.1 Accepted alive Link to Nucleotide Sequence:NM_032095.1Link to Protein Sequence:NP_115266.1Re-query CCDS DB by Nucleotide ID:NM_032095Re-query CCDS DB by Protein ID:NP_115266Link to BLAST:NP_115266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115266.1 810 Q9Y5G3-2 810 100% 0 0

Chromosomal Locations for CCDS 75330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141350261 141352693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGCAGAGAGCCAGAGAAGCCGAAATGATGAAAAGTCAGGTACTGTTTCCCTTCCTGCTGTCTTTGTTCT
GCGGGGCCATCTCCCAGCAGATCCGATACACGATTCCAGAGGAGCTAGCCAACGGCTCACGGGTGGGGAA
ACTTGCCAAGGATCTGGGGCTCAGTGTCCGGGAGTTGCCAACTCGAAAACTGCGGGTTAGTGCAGAGGAT
TATTTCAACGTTAGTTTGGAGAGCGGGGATTTGTTAGTGAACGGTAGGATAGATCGAGAGAAGATTTGCG
GAAGGAAACTTGAGTGTGCACTAGAATTCGAAACGGTCGCTGAAAACCCAATGAATGTTTTCCACGTGGT
TGTTGTAATCCAAGATATTAATGACAATGCACCACGTTTCGTTGCAAAAGGCATTGACTTAGAAATTTGT
GAGTCAGCCTTACCCGGGGTAAAATTCTCTCTGGATTCTGCTCAAGATGCAGATGTGGAAGGCAATTCAC
TGAAGTTATACACCATCAACCCCAATCAATACTTCTCTCTGTCAACGAAGGAAAGTCCTGATGGAAGTAA
ATATCCGGTATTACTGCTGGAAAAACCTCTAGACAGGGAACATCAGAGCTCTCATCGCTTAATCCTGACT
GCCATGGATGGCGGGGACCCGCCTCTAAGCGGCACCACCCATATCTGGATCCGAGTTACGGATGCCAATG
ATAATGCTCCCGTGTTTAGCCAGGAGGTATACAGGGTTAGCCTCCAAGAAAACGTACCGTGGGGAACCTC
CGTGCTGCGGGTGATGGCCACAGACCAGGATGAGGGCATTAATGCAGAGATCACCTATGCCTTCCTCAAT
TCCCCAATAAGTACCAGCCTCTTCAATCTCAATCCAAATACTGGCGACATCACAACCAATGGCACATTGG
ATTTTGAAGAGACAAGTAGATATGTGTTGAGTGTGGAAGCTAAGGATGGAGGAGTACACACAGCTCACTG
TAATGTTCAAATAGAAATTGTTGACGAGAATGACAATGCCCCAGAGGTGACATTCATGTCCTTCTCTAAC
CAGATTCCAGAGGATTCAGACCTTGGAACTGTAATAGCCCTCATAAAAGTGCGAGACAAGGATTCTGGGC
AAAATGGCATGGTGACATGCTATACTCAGGAAGAAGTTCCTTTCAAATTAGAATCCACCTCGAAGAATTA
TTACAAGCTGGTGATTGCTGGAGCCCTAAACCGGGAGCAGACAGCAGACTACAACGTCACAATCATAGCC
ACCGACAAGGGCAAACCAGCCCTTTCCTCCAGGACAAGCATCACCCTGCACATCTCCGACATCAACGACA
ATGCACCTGTTTTCCATCAGGCCTCCTATGTGGTCCACGTGTCTGAGAACAACCCACCTGGCGCCTCCAT
TGCACAAGTAAGCGCCTCCGACCCGGATTTGGGACCCAACGGCAGAGTCTCCTACTCTATTCTGGCCAGT
GACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTGAGCCCGCAGAGCGGGGTGGTGTTCGCGCAGC
GCGCCTTCGACCACGAGCAGCTGCGCGCCTTCGAGCTCACACTGCAGGCCAGGGACCAGGGCTCCCCCGC
GCTCAGCGCCAACGTGAGCCTGCGCGTGTTGGTGGGCGACCTCAATGACAATGCGCCACGGGTGCTGTAC
CCCGCGCTGGGGCCTGATGGCTCCGCCCTCTTCGATATGGTGCCACGCGCCGCAGAGCCCGGCTACCTGG
TGACCAAGGTGGTGGCGGTGGACGCAGACTCAGGACACAACGCTTGGCTGTCCTACCACGTGCTGCAGGC
CAGCGAGCCCGGGCTCTTCAGCCTGGGGTTGCGCACGGGTGAGGTGCGCACAGCGCGTGCCTTGGGCGAC
AGGGACGCGGCCCGCCAGCGCCTGCTGGTCGCTGTGCGTGATGGAGGACAGCCGCCACTCTCCGCCACCG
CCACGCTGCACCTAATCTTCGCGGATAGCCTGCAAGAGGTATTGCCAGACCTCAGCGACCGCCCTGAGCC
CTCTGACCCCCAGACGGAACTGCAGTTTTACCTGGTTGTGGCCTTGGCCTTGATCTCAGTGCTCTTTCTC
CTCGCGGTGATTCTAGCGATCGCCCTGCGCCTGCGACGTTCCTCCAGCCTCGACACTGAGGGCTGCTTTC
AAACCGGTCTCTGCTCCAAGTCTGGGCCCGGGGTTCCTCCCAACCACAGCGAGGGGACTTTGCCCTATTC
CTACAATCTATGTATTGCCTCTCATTCTGCAAAGACAGAGTTTAATTCTCTCAACCTGACACCGGAAATG
GCTCCCCCTCAGGATCTGCTGTGTGATGATCCTTCTATGGTTGTATGTGCCAGTAATGAAGATCACAAAA
TCGCTTATGACCCTTCTTTGTCTTCGCACGTGAGTTTCTGCAAATCTAGTTAA

Translation (810 aa):
MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED
YFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEIC
ESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQSSHRLILT
AMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLN
SPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSN
QIPEDSDLGTVIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA
TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS
DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLY
PALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGD
RDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFL
LAVILAIALRLRRSSSLDTEGCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEM
APPQDLLCDDPSMVVCASNEDHKIAYDPSLSSHVSFCKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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