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Report for CCDS75088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75088.1 Public Homo sapiens 4 TMEM175 24 110 108 CCDS HistoryNCBI Gene:84286Re-query CCDS DB by CCDS ID:75088.1Re-query CCDS DB by GeneID:84286See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515740.5 ENSP00000427039.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515740.5Link to Ensembl Protein Viewer:ENSP00000427039.1Re-query CCDS DB by Nucleotide ID:ENST00000515740Re-query CCDS DB by Protein ID:ENSP00000427039
Original member Current member EBI ENST00000622959.3 ENSP00000485461.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622959.3Link to Ensembl Protein Viewer:ENSP00000485461.1Re-query CCDS DB by Nucleotide ID:ENST00000622959Re-query CCDS DB by Protein ID:ENSP00000485461
Original member Current member NCBI NM_001297426.2 NP_001284355.1 Accepted alive Link to Nucleotide Sequence:NM_001297426.2Link to Protein Sequence:NP_001284355.1Re-query CCDS DB by Nucleotide ID:NM_001297426Re-query CCDS DB by Protein ID:NP_001284355Link to BLAST:NP_001284355.1
Original member Current member NCBI NM_001297427.2 NP_001284356.1 Accepted alive Link to Nucleotide Sequence:NM_001297427.2Link to Protein Sequence:NP_001284356.1Re-query CCDS DB by Nucleotide ID:NM_001297427Re-query CCDS DB by Protein ID:NP_001284356Link to BLAST:NP_001284356.1
Original member Current member NCBI NM_001297428.2 NP_001284357.1 Accepted alive Link to Nucleotide Sequence:NM_001297428.2Link to Protein Sequence:NP_001284357.1Re-query CCDS DB by Nucleotide ID:NM_001297428Re-query CCDS DB by Protein ID:NP_001284357Link to BLAST:NP_001284357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284355.1 388 Q9BSA9-2 388 100% 0 0
NP_001284356.1 388 Q9BSA9-2 388 100% 0 0
NP_001284357.1 388 Q9BSA9-2 388 100% 0 0

Chromosomal Locations for CCDS 75088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 951688 951717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 952367 952450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 953190 953354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 955405 955483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 955755 955890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 957824 958496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGATGACCATCACCTTCCTGCCTTACACGTTTTCGTTAATGGTGACCTTCCCTGATGTGCCTCTGGGCA
TCTTCTTGTTCTGTGTGTGTGTGATCGCCATTGGGGTCGTGCAGGCACTGATTGTGGGGTACGCATTCCA
CTTCCCGCACCTGCTGAGCCCGCAGATCCAGCGCTCTGCCCACAGGGCTCTGTACCGACGACACGTCCTG
GGCATCGTCCTCCAAGGCCCGGCCCTGTGCTTTGCAGCGGCCATCTTCTCTCTCTTCTTTGTCCCCTTGT
CTTACCTGCTGATGGTGACTGTCATCCTCCTCCCCTATGTCAGCAAGGTCACCGGCTGGTGCAGAGACAG
GCTCCTGGGCCACAGGGAGCCCTCGGCTCACCCAGTGGAAGTCTTCTCGTTTGACCTCCACGAGCCACTC
AGCAAGGAGCGCGTGGAAGCCTTCAGCGACGGAGTCTACGCCATCGTGGCCACGCTTCTCATCCTGGACA
TCTGCGAAGACAACGTCCCGGACCCCAAGGATGTGAAGGAGAGGTTCAGCGGCAGCCTCGTGGCCGCCCT
GAGTGCGACCGGGCCGCGCTTCCTGGCGTACTTCGGCTCCTTCGCCACAGTGGGACTGCTGTGGTTCGCC
CACCACTCACTCTTCCTGCATGTGCGCAAGGCCACGCGGGCCATGGGGCTGCTGAACACGCTCTCGCTGG
CCTTCGTGGGTGGCCTCCCACTAGCCTACCAGCAGACCTCGGCCTTCGCCCGGCAGCCCCGCGATGAGCT
GGAGCGCGTGCGTGTCAGCTGCACCATCATCTTCCTGGCCAGCATCTTCCAGCTGGCCATGTGGACCACG
GCGCTGCTGCACCAGGCGGAGACGCTGCAGCCCTCGGTGTGGTTTGGCGGCCGGGAGCATGTGCTCATGT
TCGCCAAGCTGGCGCTGTACCCCTGTGCCAGCCTGCTGGCCTTCGCCTCCACCTGCCTGCTGAGCAGGTT
CAGTGTGGGCATCTTCCACCTCATGCAGATCGCCGTGCCCTGCGCCTTCCTGTTGCTGCGCCTGCTCGTG
GGCCTGGCCCTGGCCACCCTGCGGGTCCTGCGGGGCCTCGCCCGGCCCGAACACCCCCCGCCAGCCCCCA
CGGGCCAGGACGACCCACAGTCCCAGCTCCTCCCTGCCCCCTGCTAG

Translation (388 aa):
MMTITFLPYTFSLMVTFPDVPLGIFLFCVCVIAIGVVQALIVGYAFHFPHLLSPQIQRSAHRALYRRHVL
GIVLQGPALCFAAAIFSLFFVPLSYLLMVTVILLPYVSKVTGWCRDRLLGHREPSAHPVEVFSFDLHEPL
SKERVEAFSDGVYAIVATLLILDICEDNVPDPKDVKERFSGSLVAALSATGPRFLAYFGSFATVGLLWFA
HHSLFLHVRKATRAMGLLNTLSLAFVGGLPLAYQQTSAFARQPRDELERVRVSCTIIFLASIFQLAMWTT
ALLHQAETLQPSVWFGGREHVLMFAKLALYPCASLLAFASTCLLSRFSVGIFHLMQIAVPCAFLLLRLLV
GLALATLRVLRGLARPEHPPPAPTGQDDPQSQLLPAPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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