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Report for CCDS73912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73912.1 Public Homo sapiens 16 PKD1L3 24 110 108 CCDS HistoryNCBI Gene:342372Re-query CCDS DB by CCDS ID:73912.1Re-query CCDS DB by GeneID:342372See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73912.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620267.2 ENSP00000480090.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620267.2Link to Ensembl Protein Viewer:ENSP00000480090.1Re-query CCDS DB by Nucleotide ID:ENST00000620267Re-query CCDS DB by Protein ID:ENSP00000480090
Original member Current member NCBI NM_181536.2 NP_853514.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181536.2Link to Protein Sequence:NP_853514.1Re-query CCDS DB by Nucleotide ID:NM_181536Re-query CCDS DB by Protein ID:NP_853514Link to BLAST:NP_853514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853514.1 1732 Q7Z443 1732 100% 0 0

Chromosomal Locations for CCDS 73912.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 71929538 71929678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71930052 71930183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71933420 71933521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71933915 71934125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71935358 71935518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71937292 71937419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71942560 71943024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71944030 71944170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71947492 71947591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71949783 71950017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71950118 71950310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71951564 71951744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71952894 71953093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71954105 71954301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71963205 71963351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71967137 71967315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71967906 71968007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71969875 71970105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71973324 71973517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71977236 71977467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71978255 71978383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71979786 71979912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71980007 71980134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71982059 71982235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71984036 71984167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71986221 71986469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71990280 71990329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71993216 71993332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71998272 71998394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71999684 71999978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5199 nt):
ATGTTCTTCAAAGGAGGAAGCTGGCTTTGGTTATACATCAGAACAAGTATTATTCTAGGAAGTGAGCTAA
ACAGCCCAGCACCACATGGGCAAAATAATTGTTACCAGCTTAACAGATTTCAATGCAGCTTTGAGGAAGC
ACAGCATTACTGTCATGTGCAGAGAGGATTCCTAGCTCATATTTGGAACAAGGAAGTTCAAGATCTCATC
CGGGACTATCTGGAAGAAGGAAAGAAGTGGTGGATTGGGCAAAATGTAATGCCATTGAAAAAGCATCAAG
ACAACAAATACCCAGCAGACGTTGCAGCCAACGGGCCCCCAAAGCCCCTCAGCTGCACCTACCTGTCCAG
AAACTTCATTCGGATCTCATCCAAAGGGGACAAGTGCTTACTGAAATACTATTTCATTTGCCAGACTGGT
GACTTTTTGGACGGAGATGCCCATTATGAAAGAAATGGAAATAATTCCCATTTGTACCAGAGACACAAGA
AGACAAAAAGAGGAGTTGCAATAGCAAGAGACAAAATGCCCCCAGGACCTGGTCATCTTCCAACCACATG
TCACTATCCTCTTCCTGCTCATCTTTCCAAGACCCTGTGTCATCCCATCAGCCAGTTTCCTTCAGTACTA
TCAAGTATCACATCACAGGTAACATCAGCCGCATCTGAACCCAGCAGCCAGCCTCTCCCTGTGATAACAC
AGCTCACCATGCCCGTGTCTGTCACGCATGCTGGGCAATCTCTGGCAGAAACAACTTCAAGCCCAAAGGA
AGAAGGTCATCCGAATACCTTCACCTCTTATCTACAAGTGTCATTGCAGAAGGCATCTGGTCAGGTCATA
GATGAGATAGCAGGGAACTTCAGCAGAGCAGTTCATGGTTTGCAAGCTCTTAACAAACTACAGGAAGCTT
GTGAGTTCCTCCAGAAACTAACAGCCTTAACCCCAAGATTTTCTAAGCCAGCTCAGGTTAATCTCATCAA
TTCCCTTATTTACCTGAGTGAGGAGTTACTCAGGATCCCATTTCAGAACAACAACAGTCTGGGCTTCAAA
GTTCCTCCAACTGTCTGCCCCTTTCATTCCCTCAACAATGTCACCAAAGCTGGAGAAGGAAGTTGGCTGG
AATCCAAGCGTCATACTGAGCCGGTAGAAGACATCCTGGAAATGTCCTTGGTGGAGTTTGGGAATATCGG
GGAAGCATTTCTAGAGCAGAACCAGTCTCCCGAGTCTTCAGTGACTTTGACCTCTGCCAATGCTACTCTG
CTGCTGAGCAGACAAAACATATCAACTTTACCGCTGAGCTCTTACACTCTGGGTCACCCAGCCCCTGTGA
GGCTAGGCTTTCCGTCGGCTTTAGCTTTGAAGGAGCTCTTGAATAAACATCCAGGAGTTAATGTCCAAAT
AACAGGACTAGCTTTCAATCCCTTCAAGGATTTGGACAACAGAAACATTGTTGGAAGCATTGGAAGTGTG
TTACTAAGCGCTAATCGTAAATTGCTCCAAGTCCATGATTTAATGGAGGACATTGAGATCATGCTCTGGA
GAAATGTTAGCTTGGAAACCCATCCCACCAGCCTCAACATGAGCACACATCAGCTTACAATCACAGTGAA
CGTCACTTCCTTGGAGAAATCCTTGATAGTGAGCATAGATCCTGACAGTCCCCTTTTAATGACACTCTAC
CTGGGGTTCCAGTATCAGCCTAACTGCACTCACTTCCACCTGAACATCACCCTTCCAAAGGATAAGGTGT
GGCAAAAAGATGAGGAGTACACGTGGGTGCTGAATCCAGAGCATCTGCAGCACGGGATTGGCACCTACTA
TATAACAGCTGTGCTGAGTGAGAGGCAGGAGGGTGCTCAGCAGACACCCAGCTTGGTCTCGGTCATCACC
GCCGTCACTCAGTGTTACTACTGGGAGATCCACAACCAGACATGGAGCAGCGCCGGATGCCAAGTTGGGC
CACAGAGCACAATTCTGAGGACACAGTGTCTCTGTAACCACCTGACCTTCTTTGCCAGCGACTTCTTTGT
CGTGCCCAGGACCGTGAATGTTGAAGACACGATCAAACTGTTCCTTCGCGTGACCAACAATCCTGTTGGG
GTGTCACTGCTGGCCAGCCTTTTAGGATTTTATGTGATCACAGTTGTGTGGGCTCGGAAAAAGGATCAAG
CAGATATGCAGAAGGTGAAGGTCACTGTCCTGGCTGATAATGACCCCAGCGCTCAATTTCACTACCTTAT
TCAGGTCTACACCGGATATCGAAGAAGCGCTGCTACAACAGCTAAGGTTGTCATCACCCTCTATGGATCA
GAGGGACGGAGTGAGCCCCATCACCTCTGTGACCCCCAGAAGACAGTCTTTGAACGAGGGGGCCTGGATG
TCTTCCTTCTCACCACTTGGACCTCTCTAGGGAACCTGCACAGCCTTCGGCTCTGGCATGACAATTCTGG
CGTCAGTCCCTCCTGGTATGTCAGCCAGGTAATTGTCTGTGACATGGCAGTTAAGAGGAAGTGGCATTTC
CTGTGCAATTGCTGGCTGGCTGTGGACCTCGGAGACTGTGAGCTTGACCGGGTCTTCATCCCAGTTTCAA
AGAGAGAGCTCTTTTCCTTTAGACATCTGTTTTCCTCCATGATTGTGGAAAAGTTCACCCAGGATTATCT
GTGGCTTTCAATTGCAACTCGGCATCCCTGGAACCAGTTTACAAGGGTCCAACGGCTGTCTTGCTGCATG
ACACTGCTACTCTGCAACATGGTCATCAATGTTATGTTCTGGAAGATAAACAGCACCACTGCCAAGAGAG
ATGAGCAAATGCGTCCATTTGCTGTGGCCTGGTCTGAACTGCTGGTCAGCATCCATACTGCTGTCATCCT
CTTCCCAATCAATCTTGTCATAGGGCGGCTCTTCCCGTTGATTGAGCCACAGGAGACTCTGCCCCTCTTT
CCTCCCATCCAGGCCTCCTGCCTCTCAGATGCTTCTGTTGAGCCTCTCTCTGCCACAATGGTAGTTGAGG
AATTAAAGGAAACTGTGAGATTCCTGCTCAGGAGAAATACATACCTACTCTCCAAGTGTGAGCAGCCGCC
ATGGAGTTCTTGGGACATTACTAAGCTGGTGAAACTTTTATCCAGCCTCGTATCATCTCACTTGGAGGGT
CAAGGCTGTCATCAGCAGGGAGAGCGCCACTGGGCACGTGTTGTTCCTGAAAACCACCATCATTTCTGCT
GTTACCTGCATAGAGTTCTGCAGAGGCTGAAATCTCACTTAGGCACGCTGGGTCTCACCCAGGGTCACCA
GTCCTGTGACTTCCTAGATGCAGCCAGCCAACTTCAAAAACTCCAGGAACTCTTGGAAACACATATTCTT
CCCACGGAGCAAGAGCCATCCAGGGAAGTCACCAGTTTTGCCATCCTGAGCTCAGAAGAAGGAAAAAAGC
CCATCTCAAATGGCCTGTCCAAATGGTTGACTTCAGTCTGCTGGCTCCTCTTAGGTTTCACTAGCCTGGC
TTCAGCCTTTTTTACAGCACTTTATAGCTTGGAATTGAGCAAAGACCAAGCCACCAGCTGGATGATTTCA
ATTATTTTATCAGTGCTTCAGAACATCTTCATCAGCCAGCCAGTAAAGGTGGTCTTCTTCACATTCTTAT
ACTCACTGATGATGAGCAGGATGCCACGGCTTAACAAAGAGAATGAACAACAAACAAAGAGGATCTTGGC
ACTCTTGGCAAAATGTTCTTCGTCAGTACCAGGTTCAAGAGATAAGAACAACCCCGTCTATGTAGCCCCA
GCTATAAATAGTCCAACTAAGCACCCAGAAAGAACCTTGAAAAAGAAGAAACTCTTCAAGCTGACTGGAG
ATATTTTGGTACAAATCCTCTTCCTTACCCTGTTGATGACTGCAATCTACTCTGCAAAGAACTCCAATAG
ATTTTACCTCCACCAAGCTATCTGGAAGACATTTTCGCACCAGTTCTCGGAAATCAAACTTCTTCAGGAT
TTCTACCCCTGGGCCAATCATATCCTTCTTCCTAGCCTGTATGGGGATTACAGAGGTAAGAATGCAGTCC
TGGAGCCCAGTCATTGCAAATGTGGGGTACAATTAATTTTCCAAATACCCCGTACCAAGACCTATGAGAA
AGTGGACGAAGGTCAGCTGGCGTTTTGTGATAACGGCCATACCTGTGGGCGTCCCAAGAGCCTATTCCCT
GGACTTCATCTAAGGAGGTTCAGTTACATCTGTTCACCCAGGCCCATGGTGCTGATTCCCACTGATGAGC
TTCACGAAAGGCTGACAAGCAAGAATGAGAATGGATTCAGTTACATCATGAGAGGTGCTTTCTTCACCTC
TTTGAGACTGGAAAGCTTCACTTCCCTTCAGATGTCAAAGAAGGGCTGTGTCTGGTCTATCATCTCACAA
GTCATCTATTATCTACTGGTCTGTTACTATGCCTTCATACAGGGTTGTCAGCTGAAACAGCAGAAGTGGA
GGTTCTTCACTGGGAAAAGAAACATTCTGGACACAAGTATAATCCTCATTAGCTTCATCCTCCTGGGGCT
TGACATGAAGAGTATTTCTCTACATAAGAAAAACATGGCACGATACCGCGATGACCAGGACAGATTCATC
AGCTTCTATGAGGCAGTAAAAGTGAACTCTGCTGCGACTCACCTTGTGGGCTTCCCGGTTCTCCTGGCAA
CTGTTCAGTTATGGAACCTGCTGCGTCATAGCCCCAGGCTGCGGGTCATCAGCAGGACACTGAGCCGAGC
CTGGGACGAGGTGGTGGGCTTTCTGCTGATCATCCTAATCCTGCTGACAGGCTATGCCATTGCCTTTAAC
CTGCTGTTTGGATGCAGCATCTCTGACTACCGGACATTTTTCAGCTCAGCAGTGACTGTTGTTGGTCTCC
TGATGGGAATTTCTCACCAAGAGGAGGTTTTCGCTTTAGACCCAGTCCTGGGCACCTTTCTGATCCTCAC
CAGTGTCATCTTGATGGTACTTGTGGTAATTAATCTTTTCGTTTCGGCCATTCTCATGGCCTTTGGAAAA
GAAAGAAAGTCGCTTAAGAAAGAAGCTGCACTAATAGATACACTGCTACAGAAGCTCTCAAATTTGTTAG
GAATCAGTTGGCCCCAAAAAACCTCATCTGAGCAAGCAGCCACGACAGCAGTGGGCAGTGACACTGAAGT
TTTAGATGAACTACCTTAA

Translation (1732 aa):
MFFKGGSWLWLYIRTSIILGSELNSPAPHGQNNCYQLNRFQCSFEEAQHYCHVQRGFLAHIWNKEVQDLI
RDYLEEGKKWWIGQNVMPLKKHQDNKYPADVAANGPPKPLSCTYLSRNFIRISSKGDKCLLKYYFICQTG
DFLDGDAHYERNGNNSHLYQRHKKTKRGVAIARDKMPPGPGHLPTTCHYPLPAHLSKTLCHPISQFPSVL
SSITSQVTSAASEPSSQPLPVITQLTMPVSVTHAGQSLAETTSSPKEEGHPNTFTSYLQVSLQKASGQVI
DEIAGNFSRAVHGLQALNKLQEACEFLQKLTALTPRFSKPAQVNLINSLIYLSEELLRIPFQNNNSLGFK
VPPTVCPFHSLNNVTKAGEGSWLESKRHTEPVEDILEMSLVEFGNIGEAFLEQNQSPESSVTLTSANATL
LLSRQNISTLPLSSYTLGHPAPVRLGFPSALALKELLNKHPGVNVQITGLAFNPFKDLDNRNIVGSIGSV
LLSANRKLLQVHDLMEDIEIMLWRNVSLETHPTSLNMSTHQLTITVNVTSLEKSLIVSIDPDSPLLMTLY
LGFQYQPNCTHFHLNITLPKDKVWQKDEEYTWVLNPEHLQHGIGTYYITAVLSERQEGAQQTPSLVSVIT
AVTQCYYWEIHNQTWSSAGCQVGPQSTILRTQCLCNHLTFFASDFFVVPRTVNVEDTIKLFLRVTNNPVG
VSLLASLLGFYVITVVWARKKDQADMQKVKVTVLADNDPSAQFHYLIQVYTGYRRSAATTAKVVITLYGS
EGRSEPHHLCDPQKTVFERGGLDVFLLTTWTSLGNLHSLRLWHDNSGVSPSWYVSQVIVCDMAVKRKWHF
LCNCWLAVDLGDCELDRVFIPVSKRELFSFRHLFSSMIVEKFTQDYLWLSIATRHPWNQFTRVQRLSCCM
TLLLCNMVINVMFWKINSTTAKRDEQMRPFAVAWSELLVSIHTAVILFPINLVIGRLFPLIEPQETLPLF
PPIQASCLSDASVEPLSATMVVEELKETVRFLLRRNTYLLSKCEQPPWSSWDITKLVKLLSSLVSSHLEG
QGCHQQGERHWARVVPENHHHFCCYLHRVLQRLKSHLGTLGLTQGHQSCDFLDAASQLQKLQELLETHIL
PTEQEPSREVTSFAILSSEEGKKPISNGLSKWLTSVCWLLLGFTSLASAFFTALYSLELSKDQATSWMIS
IILSVLQNIFISQPVKVVFFTFLYSLMMSRMPRLNKENEQQTKRILALLAKCSSSVPGSRDKNNPVYVAP
AINSPTKHPERTLKKKKLFKLTGDILVQILFLTLLMTAIYSAKNSNRFYLHQAIWKTFSHQFSEIKLLQD
FYPWANHILLPSLYGDYRGKNAVLEPSHCKCGVQLIFQIPRTKTYEKVDEGQLAFCDNGHTCGRPKSLFP
GLHLRRFSYICSPRPMVLIPTDELHERLTSKNENGFSYIMRGAFFTSLRLESFTSLQMSKKGCVWSIISQ
VIYYLLVCYYAFIQGCQLKQQKWRFFTGKRNILDTSIILISFILLGLDMKSISLHKKNMARYRDDQDRFI
SFYEAVKVNSAATHLVGFPVLLATVQLWNLLRHSPRLRVISRTLSRAWDEVVGFLLIILILLTGYAIAFN
LLFGCSISDYRTFFSSAVTVVGLLMGISHQEEVFALDPVLGTFLILTSVILMVLVVINLFVSAILMAFGK
ERKSLKKEAALIDTLLQKLSNLLGISWPQKTSSEQAATTAVGSDTEVLDELP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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