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Report for CCDS7373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7373.1 Public Homo sapiens 10 LRIT1 24 110 108 CCDS HistoryNCBI Gene:26103Re-query CCDS DB by CCDS ID:7373.1Re-query CCDS DB by GeneID:26103See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372105.4 ENSP00000361177.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372105.4Link to Ensembl Protein Viewer:ENSP00000361177.3Re-query CCDS DB by Nucleotide ID:ENST00000372105Re-query CCDS DB by Protein ID:ENSP00000361177
Original member Current member NCBI NM_015613.3 NP_056428.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015613.3Link to Protein Sequence:NP_056428.1Re-query CCDS DB by Nucleotide ID:NM_015613Re-query CCDS DB by Protein ID:NP_056428Link to BLAST:NP_056428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056428.1 623 Q9P2V4 623 100% 0 0

Chromosomal Locations for CCDS 7373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84231927 84232903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84234073 84234378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84237220 84237686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84241318 84241439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGAGGGTGGCATTAGGCATGCTCTGGCTCTTGGCCCTTGCGTGGCCCCCCCAGGCCCGGGGCTTCTGCC
CCTCTCAATGCAGCTGCAGCCTCCATATCATGGGTGATGGCAGCAAGGCCAGGACAGTAGTGTGCAACGA
CCCCGACATGACCCTGCCCCCGGCGTCCATCCCCCCGGACACCTCCAGACTGCGCCTGGAGCGGACGGCC
ATACGCAGGGTTCCTGGCGAGGCCTTCAGGCCCCTGGGCCGCCTGGAGCAGCTGTGGCTGCCTTACAACG
CCCTCAGCGAGCTCAACGCCCTCATGCTGCGGGGCCTGCGACGCCTGCGGGAGCTGCGGCTGCCCGGGAA
CCGCCTGGCCGCCTTCCCCTGGGCGGCGCTCAGGGACGCCCCCAAGCTGCGGCTGCTGGACCTGCAGGCC
AACCGCCTCTCGGCTGTGCCCGCTGAGGCCGCGCGCTTCCTGGAGAACCTCACCTTCCTCGACCTCTCCA
GCAACCAGCTGATGAGGCTCCCGCAGGAGCTCATCGTCTCCTGGGCTCACCTGGAGACCGGTATCTTTCC
TCCCGGCCACCACCCCAGGCGGGTCCTAGGGCTACAGGACAACCCCTGGGCATGTGACTGCCGACTCTAT
GACCTGGTTCATCTTTTGGATGGCTGGGCCCCAAACTTGGCCTTCATTGAGACTGAACTGAGATGTGCCA
GCCCACGTAGCCTGGCCGGAGTGGCCTTCAGCCAGCTTGAACTGAGGAAGTGCCAGGGCCCAGAGCTCCA
TCCAGGAGTGGCCAGCATCAGGTCCCTTTTGGGTGGCACAGCACTGCTACGCTGTGGAGCTACTGGAGTC
CCTGGGCCCGAGATGAGCTGGAGGAGGGCCAATGGCAGGCCCCTTAATGGTACAGTGCACCAGGAAGTCT
CCAGTGACGGCACGAGCTGGACTCTGCTGGGCCTGCCTGCAGTGTCCCACCTTGACTCCGGAGACTACAT
CTGCCAAGCCAAGAACTTCCTGGGAGCCTCTGAAACTGTTATCTCCTTGATTGTCACTGAGCCACCGACT
TCCACAGAACACAGTGGGAGCCCAGGAGCACTATGGGCAAGGACAGGTGGCGGAGGGGAAGCTGCTGCTT
ACAACAACAAGCTGGTGGCCAGGCATGTCCCCCAGATTCCCAAACCCGCTGTCCTGGCCACTGGACCCTC
TGTGCCCAGCACAAAGGAGGAGCTGACCCTTGAGCACTTCCAGATGGATGCCCTGGGAGAGCTCTCTGAT
GGGCGGGCAGGACCCTCAGAGGCACGAATGGTGAGGTCTGTGAAGGTGGTGGGGGACACTTACCACAGCG
TGTCCTTGGTGTGGAAGGCACCCCAGGCTAAGAACACAACTGCCTTCAGTGTCCTCTACGCGGTCTTTGG
GCAGCACAGCATGCGGCGGGTGATTGTGCAGCCTGGGAAGACCAGAGTGACCATCACTGGGCTGTTGCCC
AAGACCAAGTATGTGGCGTGTGTCTGTGTGCAGGGCCTGGTGCCCCGGAAGGAGCAGTGTGTTATTTTCT
CCACCAATGAAGTGGTGGATGCTGAGAACACTCAGCAGCTTATCAATGTGGTGGTGATCAGTGTGGCCAT
CGTCATTGCCCTGCCTCTCACGCTGCTTGTCTGCTGCAGTGCTCTTCAGAAGCGCTGCCGAAAGTGCTTC
AACAAGGACTCCACTGAGGCCACAGTTACCTACGTCAACCTAGAGAGACTGGGCTACAGCGAGGACGGCT
TGGAGGAGCTGTCCCGGCACAGTGTCAGCGAGGCTGACAGGCTTCTCTCAGCTCGTTCCAGTGTGGACTT
TCAGGCCTTTGGAGTCAAAGGGGGCAGGAGAATCAATGAGTACTTCTGCTGA

Translation (623 aa):
MRVALGMLWLLALAWPPQARGFCPSQCSCSLHIMGDGSKARTVVCNDPDMTLPPASIPPDTSRLRLERTA
IRRVPGEAFRPLGRLEQLWLPYNALSELNALMLRGLRRLRELRLPGNRLAAFPWAALRDAPKLRLLDLQA
NRLSAVPAEAARFLENLTFLDLSSNQLMRLPQELIVSWAHLETGIFPPGHHPRRVLGLQDNPWACDCRLY
DLVHLLDGWAPNLAFIETELRCASPRSLAGVAFSQLELRKCQGPELHPGVASIRSLLGGTALLRCGATGV
PGPEMSWRRANGRPLNGTVHQEVSSDGTSWTLLGLPAVSHLDSGDYICQAKNFLGASETVISLIVTEPPT
STEHSGSPGALWARTGGGGEAAAYNNKLVARHVPQIPKPAVLATGPSVPSTKEELTLEHFQMDALGELSD
GRAGPSEARMVRSVKVVGDTYHSVSLVWKAPQAKNTTAFSVLYAVFGQHSMRRVIVQPGKTRVTITGLLP
KTKYVACVCVQGLVPRKEQCVIFSTNEVVDAENTQQLINVVVISVAIVIALPLTLLVCCSALQKRCRKCF
NKDSTEATVTYVNLERLGYSEDGLEELSRHSVSEADRLLSARSSVDFQAFGVKGGRRINEYFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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