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Report for CCDS73565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73565.1 Public Homo sapiens 13 TSC22D1 24 110 108 CCDS HistoryNCBI Gene:8848Re-query CCDS DB by CCDS ID:73565.1Re-query CCDS DB by GeneID:8848See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611198.4 ENSP00000481585.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611198.4Link to Ensembl Protein Viewer:ENSP00000481585.1Re-query CCDS DB by Nucleotide ID:ENST00000611198Re-query CCDS DB by Protein ID:ENSP00000481585
Original member Current member EBI ENST00000622051.1 ENSP00000483407.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622051.1Link to Ensembl Protein Viewer:ENSP00000483407.1Re-query CCDS DB by Nucleotide ID:ENST00000622051Re-query CCDS DB by Protein ID:ENSP00000483407
Original member Current member NCBI NM_001243797.2 NP_001230726.1 Accepted alive Link to Nucleotide Sequence:NM_001243797.2Link to Protein Sequence:NP_001230726.1Re-query CCDS DB by Nucleotide ID:NM_001243797Re-query CCDS DB by Protein ID:NP_001230726Link to BLAST:NP_001230726.1
Original member Current member NCBI NM_001243798.2 NP_001230727.1 Accepted alive Link to Nucleotide Sequence:NM_001243798.2Link to Protein Sequence:NP_001230727.1Re-query CCDS DB by Nucleotide ID:NM_001243798Re-query CCDS DB by Protein ID:NP_001230727Link to BLAST:NP_001230727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230726.1 86 Q15714-5 86 100% 0 0
NP_001230727.1 86 Q15714-5 86 100% 0 0

Chromosomal Locations for CCDS 73565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 44434626 44434883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44436044 44436046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGATCTAGTGAAAAGCCATTTGATGTATGCGGTCAGAGAAGAAGTGGAGGTCCTCAAAGAGCAAATCA
AAGAACTAATAGAGAAAAATTCCCAGCTGGAGCAGGAGAACAATCTGCTGAAGACACTGGCCAGTCCTGA
GCAGCTTGCCCAGTTTCAGGCCCAGCTGCAGACTGGCTCCCCCCCTGCCACCACCCAGCCACAGGGCACC
ACACAGCCCCCCGCCCAGCCAGCATCGCAGGGCTCAGGACCAACCGCATAG

Translation (86 aa):
MDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGT
TQPPAQPASQGSGPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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