NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS73287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73287.1 Public Homo sapiens 11 TRIM64C 24 110 108 CCDS HistoryNCBI Gene:646754Re-query CCDS DB by CCDS ID:73287.1Re-query CCDS DB by GeneID:646754See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 73287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617704.1 ENSP00000481815.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617704.1Link to Ensembl Protein Viewer:ENSP00000481815.1Re-query CCDS DB by Nucleotide ID:ENST00000617704Re-query CCDS DB by Protein ID:ENSP00000481815
Original member Current member NCBI NM_001206631.1 NP_001193560.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001206631.1Link to Protein Sequence:NP_001193560.1Re-query CCDS DB by Nucleotide ID:NM_001206631Re-query CCDS DB by Protein ID:NP_001193560Link to BLAST:NP_001193560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193560.1 450 A6NLI5 450 100% 0 0

Chromosomal Locations for CCDS 73287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49053714 49054207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49055310 49055407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49056359 49056381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49057148 49057378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49058078 49058172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49058701 49059112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGATTCAGACACCCTGCGAGTCTTCCAGAATGAGCTCATTTGCTGCATTTGCGTGAACTACTTCATAG
ACCCGGTCACCACTGACTGTGTGCACAGCTTTTGCAGGCCCTGCCTCTGCCTCTGCTCAGAAGAAGGCAG
AGCACCAATGCGCTGCCCTTTGTGCAGAAAAATCTCAGAGAAGCCCAACTTCAACACCAATGTGGCACTC
AAAAAGCTGGCTTCCCTAGCCAGACAGACCAGACCTCAGAACATCAACAGCTCAGACAATATCTGTGTGC
TCCATGAGGAGACTAAGGAGCTCTTCTGTGAGGCTGACAAGAGATTGCTCTGTGGGCCCTGCTCTGAGTC
ACCAGAGCACATGGCTCACAGCCACAGCCCAATAGGATGGGCTGCTGAGGAATGCAGGGTACAGAAACTT
ATAAAGGAAATGGACTATTTATGGAAAATCAATCAAGAGACACAAAACAATCTAAATCAGGAAACTAGCA
AATTTTGTTCATTAGTGGACTATGTGTCATTAAGGAAGGTGATAATCACTATTCAGTATCAAAAGATGCA
TATATTTCTCGATGAGGAGGAGCAACGGCATCTGCAGGCACTGGAAAGAGAAGCAAAAGAGCTTTTCCAA
CAACTACAAGACAGTCAAGTGAGAATGACCCAACATTTAGAAGGGATGAAAGACATGTACAGAGAGCTGT
GGGAGACATACCACATGCCTGACGTGGAGCTGCTCCAGGATGTGGGAAATATATCGGCAAGAACTGATTT
GGCACAGATGCCAAAGCCCCAGCCAGTGAACCCAGAGCTCACTTCATGGTGCATAACTGGAGTCCTAGAC
ATGCTCAACAACTTCAGAGTGGATAATGCTCTGAGTACAGAAATGACTCCTTGCTATATAAGCCTTTCTG
AGGATGTGAGACGTGTGATATTTGGAGATGACCATCGCAGTGCACCCATGGATCCCCAAGGAGTGGAGAG
CTTTGCTGTGTGGTGTGCGCAAGCATTCACCTCCGGCAAGCATTACTGGGAAGTGGATGTGACCCACTCC
TCCAACTGGATTCTGGGAGTCTGTCGAGATTCTAGGACAGCAGATACCAATATAGTTATTGATTCTGACA
AAACATTTTTTTCAATTTCTTCAAAGACGAGCAATCACTATAGTCTCTCCACCAATTCTCCACCTTTAAT
CCAGTATGTGCAAAGGCCTCTGGGTTGGGTTGGGGTGTTTCTGGATTATGATAATGGATCTGTGAGTTTT
TTTGATGTTTCTAAAGGTTCTCTTATCTATGGTTTTCCTCCTTCCTCCTTCTCTTCCCCTCTGAGGCCTT
TCTTTTGCTTTGGTTGTACATGA

Translation (450 aa):
MDSDTLRVFQNELICCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRKISEKPNFNTNVAL
KKLASLARQTRPQNINSSDNICVLHEETKELFCEADKRLLCGPCSESPEHMAHSHSPIGWAAEECRVQKL
IKEMDYLWKINQETQNNLNQETSKFCSLVDYVSLRKVIITIQYQKMHIFLDEEEQRHLQALEREAKELFQ
QLQDSQVRMTQHLEGMKDMYRELWETYHMPDVELLQDVGNISARTDLAQMPKPQPVNPELTSWCITGVLD
MLNNFRVDNALSTEMTPCYISLSEDVRRVIFGDDHRSAPMDPQGVESFAVWCAQAFTSGKHYWEVDVTHS
SNWILGVCRDSRTADTNIVIDSDKTFFSISSKTSNHYSLSTNSPPLIQYVQRPLGWVGVFLDYDNGSVSF
FDVSKGSLIYGFPPSSFSSPLRPFFCFGCT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH