NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS73182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73182.1 Public Homo sapiens 10 PDZD7 24 110 108 CCDS HistoryNCBI Gene:79955Re-query CCDS DB by CCDS ID:73182.1Re-query CCDS DB by GeneID:79955See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73182.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619208.6 ENSP00000480489.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619208.6Link to Ensembl Protein Viewer:ENSP00000480489.1Re-query CCDS DB by Nucleotide ID:ENST00000619208Re-query CCDS DB by Protein ID:ENSP00000480489
Original member Current member NCBI NM_001195263.2 NP_001182192.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195263.2Link to Protein Sequence:NP_001182192.1Re-query CCDS DB by Nucleotide ID:NM_001195263Re-query CCDS DB by Protein ID:NP_001182192Link to BLAST:NP_001182192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182192.1 1033 Q9H5P4-3 1033 100% 0 0

Chromosomal Locations for CCDS 73182.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 101008467 101008850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101009250 101009350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101010272 101010883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101011690 101011761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101011925 101012016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101012167 101012258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101015636 101015811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101016377 101016427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101018099 101018296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101018822 101019217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101020618 101020678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101021798 101021945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101022209 101022385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101023436 101023610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101023928 101024068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101029994 101030219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3102 nt):
ATGGCGCAGGGTTTCGCAGTGGGCTTCGACCCACTGGGCCTAGGAGACCTGAGCTCCGGCTCTCTGAGCT
CCCTCTCCTCCCGAGGCCACCTAGGCAGCGACTCAGGCTCCACCGCAACGCGATACCTGCTAAGGAAGCA
ACAACGGCTGCTGAACGGGCCCCCCCGCGGAATCCGAGCCTCATCGCCCATGGGACGCGTCATCCTCATC
AACTCCCCCATCGAAGCCAACAGTGATGAAAGTGACATCATCCATTCAGTCCGGGTGGAGAAGAGTCCAG
CAGGGAGGCTGGGCTTCAGCGTGCGCGGGGGCTCAGAGCATGGCCTGGGCATCTTCGTCAGCAAAGTGGA
GGAAGGCAGCAGTGCAGAGCGGGCTGGCCTGTGCGTGGGGGACAAGATCACGGAGGTGAATGGGCTGAGC
CTGGAGAGCACCACCATGGGTAGCGCCGTAAAGGTGCTGACCAGCAGCAGCCGCCTGCACATGATGGTTC
GGCGCATGGGCCGTGTGCCGGGCATCAAGTTCTCCAAGGAGAAGACCACGTGGGTGGATGTGGTGAATCG
GCGCCTGGTAGTGGAGAAGTGCGGTTCAACACCCTCCGACACCAGCTCAGAAGATGGTGTCCGGCGCATC
GTCCACCTATACACAACCTCCGACGACTTCTGCCTGGGCTTCAACATCCGTGGGGGCAAGGAGTTTGGCC
TGGGCATCTATGTGTCCAAAGTGGACCATGGTGGGCTGGCCGAGGAGAATGGCATCAAGGTGGGGGACCA
GGTCCTGGCAGCCAACGGTGTCAGGTTTGACGACATCAGCCACAGCCAGGCCGTGGAGGTGCTGAAGGGC
CAAACGCACATCATGCTGACCATCAAGGAGACCGGCCGGTATCCTGCCTACAAGGAGATGGTTTCTGAGT
ACTGCTGGCTGGACCGACTGAGCAACGGGGTGCTGCAGCAGCTGTCCCCGGCCTCTGAGAGCAGCTCCAG
CGTCTCTTCGTGCGCCTCCAGCGCCCCCTACAGCTCGGGCTCCCTGCCGTCGGACCGCATGGACATCTGC
CTCGGGCAGGAGGAGCCCGGCAGCCGCGGCCCAGGCTGGGGGCGGGCGGACACAGCCATGCAGACGGAGC
CCGATGCGGGAGGCCGGGTGGAGACCTGGTGCAGCGTGCGGCCCACAGTCATCCTCAGGGACACCGCCAT
CCGCTCGGACGGCCCCCATCCCGGCCGCCGCCTTGACTCTGCGCTCTCTGAGTCTCCCAAGACGGCTTTG
CTGCTGGCCCTCAGCCGACCCCGGCCCCCCATCACGCGCTCCCAGAGCTATCTGACCTTGTGGGAGGAGA
AGCAGCAGCGGAAGAAGGAGAAGTCGGGGTCCCCTGGGGAGAAGGGTGCCCTGCAGCGCTCCAAGACGCT
GATGAACCTCTTCTTCAAGGGAGGGCGGCAGGGGAGGCTAGCGCGGGACGGGCGCAGAGAGGCCTGGACA
CTGGACAGCGGGAGCCTGGCCAAAACTTACCCTCGCCTGGACATAGAGAAAGCAGGGGGCGTGGGCCCGG
TACAGAAGTTTGTCACCTGGAGACTGAGACGTGACCAGGAGAGGGGCCGGGCCCTGCTGTCTGCCAGGTC
TGGGAGTCCCTCCAGCCAGCTGCCTAATGTGGATGAGCAGGTTCAGGCCTGGGAGAGCCGGCGGCCCCTC
ATTCAGGACCTGGCCCAGAGGCTGCTGACTGATGACGAGGTGCTGGCTGTCACCCGCCACTGCTCCCGGT
ATGTGCACGAGGGAGGCATAGAGGACCTGGTGAGGCCCCTGCTGGCCATCCTCGACAGGCCGGAGAAGCT
GCTACTGCTGCAGGACATCAGGAGTGTGGTGGCCCCCACAGACCTGGGCCGCTTCGACAGCATGGTGATG
CTTGTGGAGCTGGAGGCTTTTGAGGCCCTCAAGAGCAGGGCAGTCCGGCCTCCTGCTTTGAGACCAGCCC
GGCAGGACACGCCACCCAAGCGTCACCTTATCACCCCCGTGCCTGACAGCCGCGGAGGCTTCTACCTGCT
GCCGGTGAACGGCTTCCCGGAAGAGGAAGATAATGGGGAGCTGAGGGAGCGGCTGGGGGCCCTCAAGGTC
TCCCCAAGTGCCTCTGCCCCTCGCCACCCCCATAAAGGGATCCCCCCTCTACAAGACGTGCCAGTAGATG
CCTTCACCCCCCTCCGAATTGCCTGCACACCCCCTCCCCAGCTACCCCCCGTGGCTCCCCGGCCCCTGCG
GCCTAACTGGCTGCTGACAGAACCCCTGAGCCGAGAGCACCCTCCGCAGAGCCAGATCCGGGGCCGGGCT
CAGAGCCGTAGCCGCAGCCGTAGCCGCAGCCGCAGCCGCAGCAGCCGGGGTCAAGGCAAGTCTCCAGGTA
GACGCTCCCCATCCCCGGTGCCTACCCCTGCCCCCAGCATGACCAATGGGCGCTACCACAAGCCTCGGAA
GGCCAGACCCCCTCTGCCACGACCTCTGGATGGGGAGGCAGCCAAGGTGGGGGCCAAGCAAGGGCCCTCG
GAGAGTGGAACTGAGGGGACGGCCAAGGAGGCAGCCATGAAGAACCCCAGTGGCGAGCTGAAGACAGTGA
CACTGTCCAAGATGAAGCAGTCCTTAGGTATCAGCATTTCTGGGGGCATTGAGTCCAAGGTGCAGCCCAT
GGTGAAGATAGAGAAGATCTTCCCTGGGGGGGCCGCTTTCCTCAGTGGGGCCCTGCAGGCTGGCTTCGAG
CTTGTGGCAGTGGACGGAGAGAATCTAGAGCAGGTGACCCACCAGCGTGCAGTAGACACCATCCGTCGGG
CTTATCGAAACAAGGCCCGGGAGCCCATGGAGCTTGTGGTCAGGGTCCCCGGGCCCAGCCCACGGCCCTC
ACCCTCTGACTCATCAGCCCTTACTGATGGGGGCCTTCCTGCTGACCACTTGCCTGCCCACCAACCCCTT
GATGCTGCTCCAGTTCCTGCCCACTGGCTCCCAGAACCTCCCACCAATCCCCAGACTCCTCCCACTGATG
CCAGGCTCCTCCAGCCAACTCCCAGCCCAGCCCCCTCCCCAGCCCTCCAGACTCCTGATTCTAAGCCCGC
ACCCTCCCCACGCATCCCATGA

Translation (1033 aa):
MAQGFAVGFDPLGLGDLSSGSLSSLSSRGHLGSDSGSTATRYLLRKQQRLLNGPPRGIRASSPMGRVILI
NSPIEANSDESDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS
LESTTMGSAVKVLTSSSRLHMMVRRMGRVPGIKFSKEKTTWVDVVNRRLVVEKCGSTPSDTSSEDGVRRI
VHLYTTSDDFCLGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKG
QTHIMLTIKETGRYPAYKEMVSEYCWLDRLSNGVLQQLSPASESSSSVSSCASSAPYSSGSLPSDRMDIC
LGQEEPGSRGPGWGRADTAMQTEPDAGGRVETWCSVRPTVILRDTAIRSDGPHPGRRLDSALSESPKTAL
LLALSRPRPPITRSQSYLTLWEEKQQRKKEKSGSPGEKGALQRSKTLMNLFFKGGRQGRLARDGRREAWT
LDSGSLAKTYPRLDIEKAGGVGPVQKFVTWRLRRDQERGRALLSARSGSPSSQLPNVDEQVQAWESRRPL
IQDLAQRLLTDDEVLAVTRHCSRYVHEGGIEDLVRPLLAILDRPEKLLLLQDIRSVVAPTDLGRFDSMVM
LVELEAFEALKSRAVRPPALRPARQDTPPKRHLITPVPDSRGGFYLLPVNGFPEEEDNGELRERLGALKV
SPSASAPRHPHKGIPPLQDVPVDAFTPLRIACTPPPQLPPVAPRPLRPNWLLTEPLSREHPPQSQIRGRA
QSRSRSRSRSRSRSSRGQGKSPGRRSPSPVPTPAPSMTNGRYHKPRKARPPLPRPLDGEAAKVGAKQGPS
ESGTEGTAKEAAMKNPSGELKTVTLSKMKQSLGISISGGIESKVQPMVKIEKIFPGGAAFLSGALQAGFE
LVAVDGENLEQVTHQRAVDTIRRAYRNKAREPMELVVRVPGPSPRPSPSDSSALTDGGLPADHLPAHQPL
DAAPVPAHWLPEPPTNPQTPPTDARLLQPTPSPAPSPALQTPDSKPAPSPRIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH