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Report for CCDS73111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73111.1 Public Homo sapiens 10 PTPN20 24 110 108 CCDS HistoryNCBI Gene:26095Re-query CCDS DB by CCDS ID:73111.1Re-query CCDS DB by GeneID:26095See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374346.7 ENSP00000363466.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374346.7Link to Ensembl Protein Viewer:ENSP00000363466.3Re-query CCDS DB by Nucleotide ID:ENST00000374346Re-query CCDS DB by Protein ID:ENSP00000363466
Original member Current member EBI ENST00000509599.5 ENSP00000425012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509599.5Link to Ensembl Protein Viewer:ENSP00000425012.1Re-query CCDS DB by Nucleotide ID:ENST00000509599Re-query CCDS DB by Protein ID:ENSP00000425012
Original member Current member NCBI NM_001320683.2 NP_001307612.1 Accepted alive Link to Nucleotide Sequence:NM_001320683.2Link to Protein Sequence:NP_001307612.1Re-query CCDS DB by Nucleotide ID:NM_001320683Re-query CCDS DB by Protein ID:NP_001307612Link to BLAST:NP_001307612.1
Original member Current member NCBI NM_015605.9 NP_056420.3 Accepted alive Link to Nucleotide Sequence:NM_015605.9Link to Protein Sequence:NP_056420.3Re-query CCDS DB by Nucleotide ID:NM_015605Re-query CCDS DB by Protein ID:NP_056420Link to BLAST:NP_056420.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307612.1 226 Q4JDL3-7 226 100% 0 0
NP_056420.3 226 Q4JDL3-7 226 100% 0 0

Chromosomal Locations for CCDS 73111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 46932500 46932533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46940623 46940717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46943918 46944015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46946563 46946675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46964986 46965137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46967957 46968047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46999912 46999974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47000676 47000710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGTCTTCACCTAGGGACTTTAGAGCAGAGCCTGTAAACGATTATGAGGGAAATGACTCTGAAGCAGAAG
ACTTGAATTTCAGGGAGACTTTGCCTTCATCAAGTCAGGAAAACACACCTAGATCAAAGGTTTTTGAAAA
TAAAGTTAATTCAGAGAAGGTAAAACTTTCTCTTCGGAATTTCCCACATAATGATTATGAGGATGTTTTT
GAAGAGCCTTCAGAAAGTGGCAGTGATCCCAGCATGTGGACAGCCAGAGGCCCCTTCAGAAGAGACAGGT
GGAGCAGTGAGGATGAGGAGGCTGCAGGGCCATCACAGGCTCTCTCCCCTCTACTTTCTGATACGCGCAA
AATTGTTTCTGAAGGAGAACTAGATCAGTTGGCTCAGATTCGGCCATTAATATTCAATTTTCATGAGCAG
ACAGCCATCAAGGATTGTTTGAAAATCCTTGAGGAAAAAACAGCAGCGTATGATATCATGCAGGAATTTA
TGGCTTTAGAACTTAAGAATCTGCCTGGTGAGTTCAACTCTGGGAATCAACCAAGCAACAGAGAAAAAAA
TAGATACCGAGATATTCTTCCATTTCAACATCATGGATATAGTGGCCCAAATGAGAGAACAACGTTCTGG
CATGGTTCAAACGAAGGAGCAGTATCACTTTTGTTACGATATTGTGCTTGA

Translation (226 aa):
MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRNFPHNDYEDVF
EEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVSEGELDQLAQIRPLIFNFHEQ
TAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQPSNREKNRYRDILPFQHHGYSGPNERTTFW
HGSNEGAVSLLLRYCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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