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Report for CCDS72787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72787.1 Public Homo sapiens 1 SPATA6 24 110 108 CCDS HistoryNCBI Gene:54558Re-query CCDS DB by CCDS ID:72787.1Re-query CCDS DB by GeneID:54558See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396199.7 ENSP00000379502.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396199.7Link to Ensembl Protein Viewer:ENSP00000379502.4Re-query CCDS DB by Nucleotide ID:ENST00000396199Re-query CCDS DB by Protein ID:ENSP00000379502
Original member Current member NCBI NM_001286239.2 NP_001273168.1 Accepted alive Link to Nucleotide Sequence:NM_001286239.2Link to Protein Sequence:NP_001273168.1Re-query CCDS DB by Nucleotide ID:NM_001286239Re-query CCDS DB by Protein ID:NP_001273168Link to BLAST:NP_001273168.1

Chromosomal Locations for CCDS 72787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 48298713 48298893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48305787 48305878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48355670 48355769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48359586 48359770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48385309 48385349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48395267 48395354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48399351 48399644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48403802 48403882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48411464 48411588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48451552 48451600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48452994 48453131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48471958 48472008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGCGCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCG
TGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAAAAAGACACAATGTGT
CCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGAT
CCTGGAGATGTGGTTACACAGCTTGAATTGGGTGAAACACTGTCTACGTATGACGAAAATACACGAGATT
TCATGTTTCCGGGTCCAAACCAAATGTCTGGACACCATGATTCAAACCGCCAGGTTACCATGAGGAGGAT
TTCTGGCCTTCGAGGAAATGCTCCAAGGCTGGAATTTTCTACGACTTCAGTGATTACTGAATGTCTGATA
AGTTCAAGGAAATGCCACACTCAGGATAAATTTATTTACCATTTGGCTCCAGTTGAAAAATCACATGGCA
GACTGCAAAACAGAACATCAAGATCACAAAAGAAAAAATCCAAGTCACCTGAGAGAAGTAAATACTGTAT
AAATGCAAAAAACTACGAACAGCCTACAATTTCTTCAAAATCACACTCTCCATCTCCCTACACAAAAAGA
CGCATGTGTGAGCTATCTGAAGACACCAGGCGGCGGCTGGCCCATTTAAATCTGGGACCCTATGAGTTCA
AAAAAGAAACAGATAAACCTCCATTTGTGATTAGACATGTTGATCCCCCAAGTCCCAGGGCTGATACTTT
ATTGGGATCTTCTGGAAGAGACTGTGAAAGAGATGGATGGTCAAGGGTGCACAATGATCATTCTCATCTT
GGCTGCTGCCGACCCAAGGATTATAAGGTTATCAGGACACCCCATGGGAGAGACTTCGATGACTCTTTAG
AAAAATGTGAAGAGTATTTGAGCCCAAGGTCGTGTAGTAAGCCCCGGCATTCAGCGAGGACCTTGCTAGT
CCATTCAGCACCCTCAACAATGCCAAAGCATTCTCCAAGCCCTGTGTTAAATAGAGCTTCTCTCAGGGAA
AGATTTCATTCTGATTGGTGTTCACCTTCAAACTGCGATGAGATCCATGACCGGGTAAAAAATGTCTTGA
AATCACATCAGGCTCATCAAAGACATTTATATGATGAGAGAGACCTAGAGAAAGATGATGAACTGGAACT
GAAAAGAAGTCTTTTATGTAGAGACTCTGCCTATGACAGTGACCCCGAGTATAGCTCATGTCAGCAGCCA
CGTGGCACTTTCCATTTGGATGACGGTGAATACTGGTCCAACAGGGCAGCCTCTTATAAGGGAAAATCCC
ACCGACCCATCTTTGAGAACAGCATGGACAAGATGTACAGGAACTTATACAAAAAGGCCTGTAGTTCTGC
TTCACATACACAGGAAAGCTTCTGA

Translation (474 aa):
MPKVKALQCALALEISSVTCPGVVLKDKEDIYLSICVFGQYKKTQCVPATFPLVFNARMVFEKVFPDAVD
PGDVVTQLELGETLSTYDENTRDFMFPGPNQMSGHHDSNRQVTMRRISGLRGNAPRLEFSTTSVITECLI
SSRKCHTQDKFIYHLAPVEKSHGRLQNRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSHSPSPYTKR
RMCELSEDTRRRLAHLNLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCERDGWSRVHNDHSHL
GCCRPKDYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRASLRE
RFHSDWCSPSNCDEIHDRVKNVLKSHQAHQRHLYDERDLEKDDELELKRSLLCRDSAYDSDPEYSSCQQP
RGTFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSSASHTQESF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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