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Report for CCDS72470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72470.1 Public Mus musculus X Frmpd4 23 108 98 CCDS HistoryNCBI Gene:333605Re-query CCDS DB by CCDS ID:72470.1Re-query CCDS DB by GeneID:333605See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 72470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238211.1 ENSMUSP00000158917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238211.1Link to Ensembl Protein Viewer:ENSMUSP00000158917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238211Re-query CCDS DB by Protein ID:ENSMUSP00000158917
Original member Current member NCBI NM_001290428.1 NP_001277357.1 Accepted alive Link to Nucleotide Sequence:NM_001290428.1Link to Protein Sequence:NP_001277357.1Re-query CCDS DB by Nucleotide ID:NM_001290428Re-query CCDS DB by Protein ID:NP_001277357Link to BLAST:NP_001277357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277357.1 1280 A2AFR3-2 1280 100% 0 0

Chromosomal Locations for CCDS 72470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 167475298 167475302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167476787 167478076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167478464 167479522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167486796 167486934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167488987 167489169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167489699 167489788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167492873 167492999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167497813 167497949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167505446 167505565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167508202 167508333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167512208 167512315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167515804 167515908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167522090 167522135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167604559 167604661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167610871 167611031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 167729019 167729056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3843 nt):
ATGATGACAAACCGAGATGGACGTGACTACTTCATCAATCACATGACACAGGCAATCCCATTTGATGACC
CTCGGTTTGACAGCTGCCAAATCATCCCCCCAGCTCCACGAAAGGTGGAGATGAGGAGAGACCCTGTGCT
GGGCTTTGGGTTTGTGGCAGGGAGCGAAAAGCCAGTGGTCGTTCGGTCAGTAACACCAGGTGGCCCCTCA
GAAGGCAAGCTGATCCCAGGAGATCAGATTGTAATGATTAATGATGAAGCAGTCAGCGCTGCACCAAGAG
AGAGAGTCATCGACCTGGTCAGGAGCTGCAAAGAATCGATTCTGCTCACTGTCATTCAGCCCTATCCATC
TCCCAAATCAGCATTTATCAGTGCTGCTAAAAAGGCAAGATTGAAGTCCAATCCAGTCAAAGTGCGCTTT
TCCGAAGAGGTCATAATCAATGGCCAAGTGTCGGAAACTGTTAAAGACAATTCACTTCTTTTTATGCCAA
ATGTTTTGAAAGTCTATTTGGAAAACGGACAGACCAAATCCTTTCGTTTTGACTGCAGCACCTCCATCAA
GGATGTCATCTTAACCCTGCAAGAGAAGTTGTCTATCAAAGGCATTGAACACTTCTCCCTCATGCTGGAG
CAGAGAATTGAAGGGGCTGGCACCAAGCTGCTCTTGCTTCATGAACAGGAGACACTCACTCAGGTGACAC
AGAGGCCCAGCTCCCATAAGATGAGGTGTCTTTTCCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCT
GTTAAGAAGAGATCCAGTTGCTTTTGAGTATCTCTATGTTCAGAGTTGTAACGATGTCGTTCAGGAGCGA
TTTGGACCAGAGCTGAAATATGACATTGCCTTGCGGCTGGCCGCGTTACAAATGTACATTGCTACTGTCA
CCACCAAACAGACGCAGAAAATCTCCCTCAAATACATTGAGAAAGAATGGGGACTAGAGACTTTTCTTCC
ATCTGCTGTGCTGCAGAGCATGAAAGAGAAGAACATCAAGAAAGCACTCTCCCACCTTGTCAAAGCAAAT
CAAAACTTGGTACCACCGGGTAAAAAGCTCTCTGCACTACAAGCTAAGGTCCACTATCTCAAGTTCCTCA
GCGACCTGCGACTATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCAGGCAGAGAAGCGCTCAGAAGT
AACTCTTCTGGTTGGTCCCCGGTATGGCATAAGCCATGTCATAAACACCAAAACCAATCTGGTGGCTCTT
TTAGCTGACTTCAGCCATGTCAACAGGATTGAAATGTTTACTGAAGAGGAGAGCTTGGTGAGGGTGGAGT
TGCATGTGCTAGATGTGAAGCCCATTACACTACTTATGGAGTCATCAGACGCCATGAACCTGGCCTGTCT
GACAGCTGGATACTACCGGCTGCTTGTGGACTCCAGGAGGTCAATATTTAACATGGCCAACAAGAAAAAC
GCAGGCACGCAGGACACAGGATCAGAAAATAAAGGCAAGCATAATCTCCTTGGTCCTGATTGGAACTGTA
TGCCCCAGATGACCACCTTCATTGGTGAAGGCGAACAAGAAGCCCAAATCACATATATAGATTCTAAGCA
GAAGACAGTTGAGATGACAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTTATATATCGACAACTCA
TACAGTTCAGATGAACTTAACCAGCCGCTGACTCAGCCAGGTGATGCCCCCTGTGAGGCCGACTATAGAA
GTCTAGCTCAGCGGTCCCTTTTGACCCTCTCAGGACCAGACACTCTGAAGAAAGCACAGGAATCTCCGCG
AGGAGCTAAAGTGTCCTTTATTTTTGGAGATCTTGCCTTAGATGATGGCATGAGTCCCCCAACTATAGGC
TATGAAAGAATGTTAGAGGAGAATCCAGAAATGCTGGAGAAGCAGAGGAATCTCTACATCAGCAGTGCCA
ATGACATGAAGAACCTGGACCTCACTCCAGACACAGACAGCATCCAGTTTGTGGCAAATTCTGTATATGC
AAACATAGGTGATGTGAAGAACTTTGAGGCCCCTGAGGGGATAGAGGAGCCCCTCTTACATGACATCTGT
TATGCAGAAAATACGGACGATGCAGAAGATGAAGATGAGGTGAGCTGCGAGGAGGACCTCGTGGTGGGTG
AAATGAACCAACCAGCCATCCTTGACCTGTCCGGGTCAAGTGATGACATTATTGACCTCACAACCCTGCC
TCCTCCAGAAGGAGATGACAATGAGGATGACTTCCTCCTGCGTTCTCTGAACATGGCCATCGCTGCTCCC
CCACCTGGCTTTAGAGACAGTTCTGATGAAGAGGACACTCAGAGCCAGGCAACGTCCTTCCATGAGGACA
AAGAACAAGGCAGCAGCCTGCAGAATGAGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCACCAGTGC
AGAGGGCAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGAAGCTCTTTCA
GAAGAACAGCAGAAGAGTGAAAATTCAGGTGTAGCCATCTTGCGAGCTTATAGTCCCGAGTCTTCATCAG
ACTCGGGCAATGAGACTAACTCTTCTGAAATGACAGAGGGTTCTGAGCTAGCTGCAGCACAGAAGCAGTC
GGAAAGCCTCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATCACCCTCTGGCAGAAGAGCAGACAGAG
TTCCCCACCTCCAAAGCCCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAG
CGACCGACCTCCCACCCAAAGTTGTGCCTTCCAAGCAGATCCTTCACTCAGACCACATGGAAATGGAGCC
AGAAACCATGGAGACCAAGTCTGTCACTGACTATTTTAGCAAACTGCATATGGGGTCAGTAGCATATTCC
TGTACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAGAGGGGAAATCCCCCCTGAGTGGGAATATACCAG
GGAAAAAACAGCAGGGAACCAAAATAGCAGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCACTGTGTC
TTCAAGAGACAATCCACACCTCAGCACTTTTAACCTAGAGAGAACTGCCTTTCGCAAGGACAGCCAAAGA
TGGTATGTGGCCTCTGATGGTGGGGTGGTAGAGAAAAGTGGAATGGAAGCACCAGCCATGAAAGTCTTTC
CCAGAGGTCCAGGCTTGGGTAACAGAGAGGCTGAAGGGAAAGAGGATGGCACTGTGGAAGGAGGGGCTGA
TGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTGTGTAGCCTCAGCCAAAGAC
TTAGATAACCCCGAAGATACTGACTCTCCCTCTTGTGACCATGCCACTAAGCTTTCTGAGGCTGAAGACA
ATGTGGCCCGCCTTTGTGACTACCATTTGGCCAAGCGAATGTCATCCCTGCAGAGTGAGGGCCATTTTTC
TCTACAGAGCTCTCAAGGCTCTTCAGTGGACACAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTGCC
ACTCCTGTGGAATCGCCCCTCTGCCCGTCCATGGGGAAGCACATGATTCCAGATGCTTCTGGGAAAGGAG
GGAGATATATTTCACCAGAGGAGAGAGCCCCTGGCCATCCCAACCATGGAGCCACCTTCGAGGAACTGCA
CCCACAGACAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTCTGCACACAGCCATTAATGCCGACCCC
CTGTTTGGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGTGTAG

Translation (1280 aa):
MMTNRDGRDYFINHMTQAIPFDDPRFDSCQIIPPAPRKVEMRRDPVLGFGFVAGSEKPVVVRSVTPGGPS
EGKLIPGDQIVMINDEAVSAAPRERVIDLVRSCKESILLTVIQPYPSPKSAFISAAKKARLKSNPVKVRF
SEEVIINGQVSETVKDNSLLFMPNVLKVYLENGQTKSFRFDCSTSIKDVILTLQEKLSIKGIEHFSLMLE
QRIEGAGTKLLLLHEQETLTQVTQRPSSHKMRCLFRISFVPKDPIDLLRRDPVAFEYLYVQSCNDVVQER
FGPELKYDIALRLAALQMYIATVTTKQTQKISLKYIEKEWGLETFLPSAVLQSMKEKNIKKALSHLVKAN
QNLVPPGKKLSALQAKVHYLKFLSDLRLYGGRVFKATLVQAEKRSEVTLLVGPRYGISHVINTKTNLVAL
LADFSHVNRIEMFTEEESLVRVELHVLDVKPITLLMESSDAMNLACLTAGYYRLLVDSRRSIFNMANKKN
AGTQDTGSENKGKHNLLGPDWNCMPQMTTFIGEGEQEAQITYIDSKQKTVEMTDSTLCPKEHRHLYIDNS
YSSDELNQPLTQPGDAPCEADYRSLAQRSLLTLSGPDTLKKAQESPRGAKVSFIFGDLALDDGMSPPTIG
YERMLEENPEMLEKQRNLYISSANDMKNLDLTPDTDSIQFVANSVYANIGDVKNFEAPEGIEEPLLHDIC
YAENTDDAEDEDEVSCEEDLVVGEMNQPAILDLSGSSDDIIDLTTLPPPEGDDNEDDFLLRSLNMAIAAP
PPGFRDSSDEEDTQSQATSFHEDKEQGSSLQNEEIPVSLIDAVPTSAEGKCEKGLDPAVVSTLEALEALS
EEQQKSENSGVAILRAYSPESSSDSGNETNSSEMTEGSELAAAQKQSESLSRMFLATHEGYHPLAEEQTE
FPTSKAPSVGLPPKSSHGLAARPATDLPPKVVPSKQILHSDHMEMEPETMETKSVTDYFSKLHMGSVAYS
CTSKRKSKLPEGEGKSPLSGNIPGKKQQGTKIAEIEEDTKGKAGTVSSRDNPHLSTFNLERTAFRKDSQR
WYVASDGGVVEKSGMEAPAMKVFPRGPGLGNREAEGKEDGTVEGGADDASVLGQGDRFLTDMACVASAKD
LDNPEDTDSPSCDHATKLSEAEDNVARLCDYHLAKRMSSLQSEGHFSLQSSQGSSVDTGCGPGSSSSACA
TPVESPLCPSMGKHMIPDASGKGGRYISPEERAPGHPNHGATFEELHPQTEGMCPRMTVPALHTAINADP
LFGTLRDGCHRLPKIKETTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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