NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS72460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72460.1 Public Mus musculus X Scml2 23 108 98 CCDS HistoryNCBI Gene:107815Re-query CCDS DB by CCDS ID:72460.1Re-query CCDS DB by GeneID:107815See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019101.10 ENSMUSP00000019101.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019101.10Link to Ensembl Protein Viewer:ENSMUSP00000019101.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019101Re-query CCDS DB by Protein ID:ENSMUSP00000019101
Original member Current member NCBI NM_001290651.1 NP_001277580.1 Accepted alive Link to Nucleotide Sequence:NM_001290651.1Link to Protein Sequence:NP_001277580.1Re-query CCDS DB by Nucleotide ID:NM_001290651Re-query CCDS DB by Protein ID:NP_001277580Link to BLAST:NP_001277580.1

Chromosomal Locations for CCDS 72460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 161171514 161171535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161177247 161177317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161178037 161178271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161187264 161187352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161192204 161192447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161202014 161202097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161209195 161209269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161209609 161209683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161213241 161213324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161215180 161215263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161221666 161221749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161223157 161223240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161224461 161224544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161225877 161225960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161227373 161227456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161228677 161228760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161230091 161230174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161231400 161231483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161234613 161234696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161237480 161237757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161239750 161239864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161241988 161242191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161243366 161243548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161246257 161246367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 161256566 161256573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGGGGCAAACAGCGAATGAAGATCATTTTGACTGGGACAAGTACTTGAAAGAGACTGGATCGATAAGTG
CTCCTTCTGAATATTTCAGACAGTCTAAGACTCCACCAACTAATGAATTCAAAATTGGTATGAAATTGGA
AGCCCGTGACCCTCGCAATATTGATTCGGTGTGTGTTGCTTCGGTCATTGGAATTACTGGAGCCAGGTTA
CGTCTACGACTGGATGGTAGTGACAATAAGAATGATTTTTGGAGACTTGTGGATTCATCAGACATACAAC
CTGTTGGGACGTGTGAACAAGGAGGAGATTTACTTCAGCCTCCACTGGGGTACACACTGAATACTTCATC
ATGGCCCATGTTCTTACTACGTGTACTAACTGGATCTGAACTGGCACCTGCAGTGTTCTTTAAGGAGGAA
CCACCACGTCCACTCCAAAATAATTTCATAGTTGGGATGAAGATTGAAGCTGTCGATAGAAAAAATCCAT
TTATGATCTGTCCTGCCACAATTGGAGCTGTCTGTGGAGATCAACTTCATATCACTTTTGATGGATGGAG
TGGAGCATTTGATTATTGGTGTGACTATGACTCCCGAGACATCTTCCCAGTTGGATGGTGTCGCCTCACA
GGAGATGTATTACAGCCACCAGGAAAAATTGTTGAAAAAAGACCAAGGCGCAAAAGAAGAACCAGACTAT
GGAGACTTAGAACTGCTCTTTTGGGAAATGAAGAAGAGGCCCCAGAAGCTGCAGAAGAACCTGGGACCAG
TGTACTTACTTTTGGAGATGAAAACAGAACTTTGAAAGATTGCCGAGGAGAAGCTGCAGAAGAACCTGGG
ACCAGTGCATTTACTTTTGGAGATGAAAACAGAACTTTGAAAGATTGCCAAGGAGGTTGGAAAAAACCCA
AGGGCAGAGGATTCATCAAACCTGGAAAAGATGAAACCAGACCTGGGAAACATGACCAAGGAGCCCCAGC
TGGGAAAAAACCCAGGGGCAGAGGATTCACCCAACCTTTGGAAGATGAAGCCAGACCAGGAAGAGATGTC
CAAGTAGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGAC
TTTTTGCAGATCAAGGAGATGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGAC
TGAGGATCCCAGACTTTTTGCAGATCAAGGAGATGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTC
ACCACACCTTGGACTGAGGATCCCAGACTTTTTGCAGATCAAGGAGCAGCCCCAGCTGAGAAAAAACGCA
AGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGACTTTTTGCAGATCAAGGAGATGCCCCAGC
TGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGACTTTTTGCAGATCAA
GGAGATGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGACTGAGGATCCCAGAC
TTTTTGCAGATCAAGGAGCAGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTCACCACACCTTGGAC
TGAGGATCCCAGACTTTTTGCAGATCAAGGAGATGCCCCAGCTGAGAAAAAACGCAAGGGCAAAACAGTC
ACCACACCTTGGACTGAGGATCCCAGACTTTTTGCAGATCAAGGAGATGCCCCAGCTGAAAAAAAACCCA
AGGGCAAAAGAGTCACCAAATCTCGGAAAGACCAAGCCCAGTTTTTAGCTGATGAAGAAGCAATGCCAGC
TCTTTTTTCAGCTCTTAGTGTGAGCAGTACAGAGAGAACACCACCTTCTTCCTCTGAACAACCAAAGTCT
TCTACCTCTGGGAAAACAAAATCCACCTCTAGAGGGGCTCAAACTTCAAGGAAGTCTCCACGGAAAACAA
GTGTTGTGCAACCAGTACCAAAGACCAGCAAGAAAGCAGGAAAATCTAAGTCTACTGGAAATACTTCATC
CCCTAAGAAGGGCATTACTATTAAAATTGTCCTACCAAAGAAAAAGGGTGGAAAGTCTGGAAAAAAGGAA
AAAAGTATTCCAGTTATTTCTTCTACATCTTCAGCTTCTTTAAGTACACTGATGAAAAGTTCTTCATCTA
ATAAGACTTCTGCGGGGCCATCTAAAATAGTGATGTCTACAGTTTGTGTGTATATAAATAAACATGGAGA
TTGTGGCCCCTTCCTGGATCCACAGAAGGTTCAGCAGCTACCTAACCACTTCGGTCCAGGCCCTGTGAAT
GTCATTCTCCAGCGGACTGTGCAGGCCTGTGTCAATTGTGCCTTTCAGGCCAAGGATGTGTTTCTATTTC
TTAAAACAGATAATAGAGGAGGAGAAATGATAACTGCCTTCTTTGATGGGAAAGTTCATACTGTTCAGCT
CCCTCCAGTGAATAGTGCATCATTTGCACTTCGCTTTCTTGAAAATTTCTGCCAAAGCCTGCAGTGTGAT
AACTTTTTGAGTAGCCAGCCTTTCAGACGTGAGGCTCAAGTTCCTACCCCAGATACAGGCACTGATCAAA
GCAAACCAGAAAATGGGGAACCAAAGGAAAAGAGAAGCCTCAAACGATTGTCTCTGCATCCTCATCGTTC
TGCTCCTGTCTCATCTAAGGTTCCCAGAAAGTCTGGGCAAGCGTCTAAAGGAAATTGA

Translation (905 aa):
MGQTANEDHFDWDKYLKETGSISAPSEYFRQSKTPPTNEFKIGMKLEARDPRNIDSVCVASVIGITGARL
RLRLDGSDNKNDFWRLVDSSDIQPVGTCEQGGDLLQPPLGYTLNTSSWPMFLLRVLTGSELAPAVFFKEE
PPRPLQNNFIVGMKIEAVDRKNPFMICPATIGAVCGDQLHITFDGWSGAFDYWCDYDSRDIFPVGWCRLT
GDVLQPPGKIVEKRPRRKRRTRLWRLRTALLGNEEEAPEAAEEPGTSVLTFGDENRTLKDCRGEAAEEPG
TSAFTFGDENRTLKDCQGGWKKPKGRGFIKPGKDETRPGKHDQGAPAGKKPRGRGFTQPLEDEARPGRDV
QVAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTV
TTPWTEDPRLFADQGAAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQ
GDAPAEKKRKGKTVTTPWTEDPRLFADQGAAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTV
TTPWTEDPRLFADQGDAPAEKKPKGKRVTKSRKDQAQFLADEEAMPALFSALSVSSTERTPPSSSEQPKS
STSGKTKSTSRGAQTSRKSPRKTSVVQPVPKTSKKAGKSKSTGNTSSPKKGITIKIVLPKKKGGKSGKKE
KSIPVISSTSSASLSTLMKSSSSNKTSAGPSKIVMSTVCVYINKHGDCGPFLDPQKVQQLPNHFGPGPVN
VILQRTVQACVNCAFQAKDVFLFLKTDNRGGEMITAFFDGKVHTVQLPPVNSASFALRFLENFCQSLQCD
NFLSSQPFRREAQVPTPDTGTDQSKPENGEPKEKRSLKRLSLHPHRSAPVSSKVPRKSGQASKGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH