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Report for CCDS71718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71718.1 Public Mus musculus 5 Uspl1 23 108 98 CCDS HistoryNCBI Gene:231915Re-query CCDS DB by CCDS ID:71718.1Re-query CCDS DB by GeneID:231915See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119685.7 ENSMUSP00000114104.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119685.7Link to Ensembl Protein Viewer:ENSMUSP00000114104.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119685Re-query CCDS DB by Protein ID:ENSMUSP00000114104
Original member Current member NCBI NM_001286824.1 NP_001273753.1 Accepted alive Link to Nucleotide Sequence:NM_001286824.1Link to Protein Sequence:NP_001273753.1Re-query CCDS DB by Nucleotide ID:NM_001286824Re-query CCDS DB by Protein ID:NP_001273753Link to BLAST:NP_001273753.1

Chromosomal Locations for CCDS 71718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149187775 149187834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149188345 149188473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149193840 149194440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149198645 149198758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149201760 149201889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149204269 149204394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149209643 149209800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149213352 149215261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3228 nt):
ATGACGGATGATTCTCTGAAGATTGGAAATGGTTTGCCACTGGTTGGACCAGGGACTGATAATTATGCTT
CAGCTAAAGTCACAACAGACGGGCATTGCCCTGCTTGTAGAGCGAAAGGCAAGCTAAGTGCCTTAAAACC
TTACCGCATTAGCTTCCAAGAATCTGTCTTTCTGTGTGAGGATCTTCAGTGCATTTATCCTTTGGGCTCT
GAGTCACTTACTAATTTAATTTCTCCTGATTCAGAAGATTGTCCCACTCCAAGTAAGCCTCAAAAACGAA
AAAGATTGGAAACCAACTGTAGGAATTCACCTCTTCCAGTACATTCTAAAAAGACTAGAAGTCACATTGT
CACTGATAGTGAACCAATTGTGAATGGTAAATATAATGGAGAAGTGTGTGATGACTTCTCAGCAAGCTTC
CCAGATACCAGTGCTCACCAGGATCCTGCCAGCACAGCTGCTTCTGTGGAGCAGAGTGAGGCTTTGGAGG
CTGATGATGTGGTTGTGGCCGCTACAGAAGATCCTGCTACAGTTAGTGTCACATCTGAGCTGGAAATGCC
AGCTAAGAGCAGATGTTTACCACTTTGCCAGACTCTGTGTGTCCAGTGGAAAAACACCCAGGCCCTGTGC
TGGTTAGACTGTATCCTGTCAGCCCTGGTGCACTTGGAGGTGTTGAGGAAGACTGTGCTGGAGGCGTGCT
CCAGGGAGGAGTGTGTATTTGGAAGGCTGTTTGAAATGTACCACCAAGCAGATGAGCTGCTGCACACCCA
TCACCTGCATGGCGTCACAGGTGAAGATTGTAAAAAATTGACATCAGAAATATTTACAGAAATAGATACC
TGTTTGAATAAAGTTAGAGATGAAATTTTTGCTAAACTTCAACCGAAGCTTAGATGCACATTAGGTGACA
TGGAAAGTCCTGTGTTTGCACTTCCTGTACTGTTAAAGCTTGAACCCCATGTTGAAAGCCTCTTTACATA
TTCTTTTTCTTGGAATTTTGAATGTTCCCATTGTGGACACCAGTACCAAAACAGGTGTGTGAAGAGTCTG
GTCACCTTTACCAATATTGTTCCTGAGTGGCATCCACTCAATGCTGCCCATTTTGGTCCATGTAACAGCT
GCAACAGTAAATCACAAATAAGAAAAATGGTGTTGGAAAGAGCGTCGCCCATACTCATGCTGCACTTCGT
GGAGGGCTTACCAAGGAGGGATTTGCAACACTATGCCTTCCACTTTGAAGGAAGCCTTTATCAAGTCACG
TCGGTAATACAGTACCAAGCAAATAACCATTTTATAACATGGTTTTTAGATGCTGATGGGAGTTGGCTGG
AGTGTGATGACCTAAAGGGTCCCTGTGCTAAAAGGCACGTGACCTGTGAAGTGCCAGCTTCAGAGACACA
TATCGTTATTTGGGAAAGAAAATCCCAGGTGCCAATTGAAGAAGCTGCCTGCCTTCCATGCATGAAGCCA
AATGTGCAGCCTGTATCAGGTGAGGAGCAGCCGACTTGTCCAGCACTGTGTTCTCTGGCTGGGACCGCCA
CCTCAGAACCCTCAGTCGCCCATCCCACATCTATGGCAGGCGCTCCTCAGACTCTTCCAGAAATCCAAGC
TGTAGCTCATGGAGATAGTGTACTTTCAGGAGCAAAAGGCATGGTCGACAGCATTTTACCCTCAGCACTT
GAAGAAACCATCCAGGAAACTGCCTCTGTTTCTCAGGTTGACTCCAAAGATTGCCTGTTGGAAGACAAAC
CCGTGGCAGGAAGTGCAGCACTGGTCAGAGTACTTGCTTTTCAGCCACAGGACTCCCCGGGGTCTTCGGG
GTCTTCCTTAGTGTCCAGCCTGTGTGAAGGAAAGCTAGTTGCCCCATGTGTGGATTCAAGTTTCCCATCC
CAAGCTGTGAGCACAGACCTGCAGGCAGTACTGTCCCAGGCAGGGGACACTGTGGTTCCTAACCCTGTGA
CTGATGCCCCTGTTCCTGTTCTTGTTCAGGAATTGAAGTCCCTGGCAACTGAGAAGGACTCTCAGACACA
GTTGCTGCCACTGAAAACTGAGAAGTTAGATCCTGAGCAACCTGGTAAATCTCAGGCATCTAATTTGAGA
AAACGAGAAACCACAGCGTCTTCTAAAACAGTAGCAGCCAGGTCAGCACAGAATCAGCCTCGGAAAGAAG
ATCAGAAGAGAGCCTTCGTGGGAAGTTGGGTGAAGGGGCTATTGAGCAGGGGTGGTGCTTTTATGCCAAC
CTGTGTTTTGTCTCAGAGTAGAGCAGTAAGTGACCTGCAACCTTCTGTTAAAGGAGCCAGTAATTTTGAT
GGCTTTAAAACGAAAAGTATAAGCCGCAGGTCTAAAAGAATGTCCAGGAAAGCTAAGCACATGGAGGAAC
TGTCTCCAAGGAACAGCTCTCCACCATTGAGCTGGACAGCTGCTCTGACCCAGGCTGCTGAGAACGCCAC
CTCAGCTCTGTTGAGGGAGCAGGAAGGCTCACGTCCAGCTCCCCTCAGGCACAGATCTCCTGGCAATGAA
AGCGCCATCTCTCCAGCAAGCCGTGGAGATGCGGCTGAAGATCAGGTTCATAAGCTTCGGCTCAAACTTC
TTAAAAAATTAAAGGCAAAAAAGAAGAAACTAGCTGCCCTCATTTCTTCCCCGCACCGTGAACCATCTCT
AAGTGACCACTCAGAGCCTGCGTCCCATTGTGGAACACCTGCAAGTGACCAGTCAGAGCCTGTATCCCAT
TGTGGATCTCCAAATGACTGTGAGTCCATAGAAGATCTGTTAAAAGAGCTACAGCATCAAATTGACCTTG
CAGACAGCAAATCTGGGTGCACCTCTGCTCCTGATGCCACCTCAAATAACAGCCAGAGTCATGAGGAGAT
TTTAGCAGAGTTGCTGTCGCCTACAGCCATGTCAGAGCCCTCAGAAAGTGGGGAGCTTGAGTTGAGGTAC
TTGGAAATGGGGGACAGCACCCCAGCACAAGCACCTAGTGAATTCAGTGTTGTCTCCCAGAACACATGTC
TGAAACAGGACCATGATTACTGCAGCCCTGAGAAAGGCCAGCGGGAAGTTGATCTGCATTCAGTCATGGA
CAGTGCCTGTATAAGAACCTTGAACTTGGGGAGTCCCATGAAGACTGATATCTTTGATGATTTTTTTTCC
ACCTCAGCACTGAATTCTTTAACAAACGACACATTAGACATACCTCATTTTGATGACTCTCTGTTTGAGA
ATTGCTGA

Translation (1075 aa):
MTDDSLKIGNGLPLVGPGTDNYASAKVTTDGHCPACRAKGKLSALKPYRISFQESVFLCEDLQCIYPLGS
ESLTNLISPDSEDCPTPSKPQKRKRLETNCRNSPLPVHSKKTRSHIVTDSEPIVNGKYNGEVCDDFSASF
PDTSAHQDPASTAASVEQSEALEADDVVVAATEDPATVSVTSELEMPAKSRCLPLCQTLCVQWKNTQALC
WLDCILSALVHLEVLRKTVLEACSREECVFGRLFEMYHQADELLHTHHLHGVTGEDCKKLTSEIFTEIDT
CLNKVRDEIFAKLQPKLRCTLGDMESPVFALPVLLKLEPHVESLFTYSFSWNFECSHCGHQYQNRCVKSL
VTFTNIVPEWHPLNAAHFGPCNSCNSKSQIRKMVLERASPILMLHFVEGLPRRDLQHYAFHFEGSLYQVT
SVIQYQANNHFITWFLDADGSWLECDDLKGPCAKRHVTCEVPASETHIVIWERKSQVPIEEAACLPCMKP
NVQPVSGEEQPTCPALCSLAGTATSEPSVAHPTSMAGAPQTLPEIQAVAHGDSVLSGAKGMVDSILPSAL
EETIQETASVSQVDSKDCLLEDKPVAGSAALVRVLAFQPQDSPGSSGSSLVSSLCEGKLVAPCVDSSFPS
QAVSTDLQAVLSQAGDTVVPNPVTDAPVPVLVQELKSLATEKDSQTQLLPLKTEKLDPEQPGKSQASNLR
KRETTASSKTVAARSAQNQPRKEDQKRAFVGSWVKGLLSRGGAFMPTCVLSQSRAVSDLQPSVKGASNFD
GFKTKSISRRSKRMSRKAKHMEELSPRNSSPPLSWTAALTQAAENATSALLREQEGSRPAPLRHRSPGNE
SAISPASRGDAAEDQVHKLRLKLLKKLKAKKKKLAALISSPHREPSLSDHSEPASHCGTPASDQSEPVSH
CGSPNDCESIEDLLKELQHQIDLADSKSGCTSAPDATSNNSQSHEEILAELLSPTAMSEPSESGELELRY
LEMGDSTPAQAPSEFSVVSQNTCLKQDHDYCSPEKGQREVDLHSVMDSACIRTLNLGSPMKTDIFDDFFS
TSALNSLTNDTLDIPHFDDSLFENC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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