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Report for CCDS71628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71628.1 Public Mus musculus 5 Cdc7 23 108 98 CCDS HistoryNCBI Gene:12545Re-query CCDS DB by CCDS ID:71628.1Re-query CCDS DB by GeneID:12545See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117196.8 ENSMUSP00000112392.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117196.8Link to Ensembl Protein Viewer:ENSMUSP00000112392.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117196Re-query CCDS DB by Protein ID:ENSMUSP00000112392
Original member NCBI NM_001271567.1 NP_001258496.1 Updated not alive Link to Nucleotide Sequence:NM_001271567.1Link to Protein Sequence:NP_001258496.1Re-query CCDS DB by Nucleotide ID:NM_001271567Re-query CCDS DB by Protein ID:NP_001258496
Current member NCBI NM_001271567.2 NP_001258496.1 Accepted alive Link to Nucleotide Sequence:NM_001271567.2Link to Protein Sequence:NP_001258496.1Re-query CCDS DB by Nucleotide ID:NM_001271567Re-query CCDS DB by Protein ID:NP_001258496Link to BLAST:NP_001258496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258496.1 532 Q9Z0H0-2 532 100% 0 0

Chromosomal Locations for CCDS 71628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 106965018 106965114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106968858 106968941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106969159 106969294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106972747 106972840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106972925 106973067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106973777 106974020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106975485 106975660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106976630 106976712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106979295 106979444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 106982964 106983355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGAGGAGCCAATGGCGTTTTCTTCCCTTCGTGGCAGTGACAGGTGTCCGGCTGATGACTCTTTAAAAA
AATATGAGCAGAGTGTTAAACTTTCAGGTATTAAAAGAGATATTGAGGAGCTTTGTGAAGCTGTACCACA
ACTAGTCAATGTGTTCAAAATTAAGGACAAAATTGGAGAAGGCACCTTCAGCTCTGTTTATTTGGCCACA
GCACAGTTGCAAGAAGGACATGAAGAGAAAATTGCGCTGAAACACTTAATTCCCACAAGTCATCCTATGA
GGATTGCAGCAGAGCTTCAGTGTCTGACAGTTGCAGGGGGGCAAGACAATGTCATGGGACTTAAGTACTG
CTTCAGAAAAAATGATCATGTGGTTATTGCTATGCCGTATCTGGAACATGAGTCCTTTTTGGACATTTTG
AATTCTCTTTCCTTCCAAGAAGTTCGGGAATATATGTATAATCTTTTTGTAGCTTTGAAACGGATTCATC
AGTTTGGTATTGTTCACCGTGATGTGAAGCCCAGCAATTTTTTATACAATAGACGTCTGAAAAAGTATGC
CTTGGTGGACTTCGGTTTGGCCCAGGGAACCCGTGACACAAAAATAGAGCTGCTCAAGTTTGTCCAGTCT
GAGGCTCAGCAGGAAGATTGTTCACGAAACAAGTATCATGGAGTCGTTGGACACAAGGGCCTGCTGAGTC
GCCCGGCACCTAAAACTGTGGATCAGCAGTGTACCCCAAAAACTTCTGTCAAAAGATCCTACACACAAGT
TCACATTAAGCAAGGAAAAGACGGAAAGCTCATCAAGCAATCAAAGACTGTGGACATAATATCACGAAAG
CTAGCGACAAAAAAGACGGCCATTTCTACAAAAGCTATGAACAGCGTGATGAGGGAAACTGCCAGGTCCT
GCCCTGCTGTCCTCACCTGCGACTGCTATGGATCAGATAGAGTCTGCAGCGTTTGCCTGTCGAGGCGGCA
GCAGGTTGCCCCTAGGGCAGGCACACCAGGATTCAGAGCGCCAGAGGTCCTGACAAAGTGTCCTGACCAG
ACCACAGCGATTGACATGTGGTCTGCAGGTGTCATATTCCTGTCCTTGCTCAGTGGGCGGTACCCATTTT
ACAAGGCCAGTGATGACTTAACTGCTTTGGCTCAGATCATGACAATTCGAGGATCCAGGGAAACTATCCA
GGCTGCTAAAGCTTTTGGCAAATCAGTTCTGTGTAGCAAAGAAGTCCCAGCACAAGACTTGAGAGCTCTC
TGTGAGAGACTGCGGGGTCTAGACTCTACCACTCCCAGGTCAGCCAGTGGTCCTCCAGGGAATGCTTCCT
ATGACCCTGCTGCTTCCAAGAACACTGACCACAAAGCATCCCGTGTACAGGCTGCTCAGGCACAGCACTC
AGAGGACTCCTTGTATAAAAGGGACAACGATGGCTATTGGAGTCATCCCAAAGACTGCACTTCCAACTCA
GAAGGCTGGGACTCAGTACCTGATGAAGCCTATGACCTGCTCGACAAGCTTCTGGACCTAAACCCAGCTT
CAAGGATAACAGCAGAAGCAGCCTTATTACATGCGTTCTTTAAAGATATGTGCTCCTGA

Translation (532 aa):
MEEPMAFSSLRGSDRCPADDSLKKYEQSVKLSGIKRDIEELCEAVPQLVNVFKIKDKIGEGTFSSVYLAT
AQLQEGHEEKIALKHLIPTSHPMRIAAELQCLTVAGGQDNVMGLKYCFRKNDHVVIAMPYLEHESFLDIL
NSLSFQEVREYMYNLFVALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTRDTKIELLKFVQS
EAQQEDCSRNKYHGVVGHKGLLSRPAPKTVDQQCTPKTSVKRSYTQVHIKQGKDGKLIKQSKTVDIISRK
LATKKTAISTKAMNSVMRETARSCPAVLTCDCYGSDRVCSVCLSRRQQVAPRAGTPGFRAPEVLTKCPDQ
TTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKAFGKSVLCSKEVPAQDLRAL
CERLRGLDSTTPRSASGPPGNASYDPAASKNTDHKASRVQAAQAQHSEDSLYKRDNDGYWSHPKDCTSNS
EGWDSVPDEAYDLLDKLLDLNPASRITAEAALLHAFFKDMCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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