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Report for CCDS71608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71608.1 Public Mus musculus 5 Exoc1 23 108 98 CCDS HistoryNCBI Gene:69940Re-query CCDS DB by CCDS ID:71608.1Re-query CCDS DB by GeneID:69940See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049469.12 ENSMUSP00000046719.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049469.12Link to Ensembl Protein Viewer:ENSMUSP00000046719.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049469Re-query CCDS DB by Protein ID:ENSMUSP00000046719
Original member NCBI NM_001289771.1 NP_001276700.1 Updated not alive Link to Nucleotide Sequence:NM_001289771.1Link to Protein Sequence:NP_001276700.1Re-query CCDS DB by Nucleotide ID:NM_001289771Re-query CCDS DB by Protein ID:NP_001276700
Current member NCBI NM_001289771.2 NP_001276700.1 Accepted alive Link to Nucleotide Sequence:NM_001289771.2Link to Protein Sequence:NP_001276700.1Re-query CCDS DB by Nucleotide ID:NM_001289771Re-query CCDS DB by Protein ID:NP_001276700Link to BLAST:NP_001276700.1

Chromosomal Locations for CCDS 71608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76532765 76532888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76535554 76535684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76537698 76537857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76542051 76542238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76543455 76543682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76543878 76544010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76545254 76545363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76549452 76549601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76554100 76554205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76559004 76559167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76559718 76559825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76560330 76560406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76561292 76561520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76563230 76563413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76566957 76567156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76567967 76568161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76569618 76569770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2640 nt):
ATGACAGCAATCAAGCATGCGCTGCAGAGAGATATCTTCACACCAAATGATGAACGCCTGCTGAGCATCG
TGAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACTGTTTTCTGTGTGCCACAGTGACCACTGAACGCCC
CGTGCAGGTGAAGGTGGTCAAAGTCAAGAAATCCGACAAGGGAGATTTCTACAAAAGGCAGATTGCTTGG
GCCCTGCGAGACCTTGCTGTGGTCGACGCCAAAGATGCCATCAAAGAAAACCCGGAATTTGATTTGCATT
TTGAGAAGGTCTATAAGTGGGTGGCCAGCAGCACGGCTGAGAAGAACGCCTTCATCTCCTGCATTTGGAA
GCTGAACCAGCGCTACCTGCGCAAGAAAATCGACTTTGTTAATGTTAGCTCGCAGCTTTTGGAAGAATCT
GTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGGGGATGAAGAAGCGGTAGATGAGTACCAAGAGTTAA
ATGCAAGAGAAGAGCAGGACATCGAGATAATGATGGAAGGCTGCGAGTGCGCCATTTCTAACGCTGAAGC
CTTTGCGGAGAAGTTGTCCCGGGAGCTGCAGGTGCTCGATGGGGCCAACATTCAGTCAATCATGGCCTCT
GAGAAACAAGTGAACACCCTGATGCAGTTGCTGGATGAGGCGCTAACGGAGGTGGACCAGATTGAACTGA
AACTGAGCAGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAGATGGATCAGATCTCTGAGAGCAACCA
CCTGATCCATCTCAGCAACACGAATAATGTGAAGCTCCTGTCCGAGATAGAGTTCCTCGTGAACCACATG
GACTTGGCCAAAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGTTTCTTCCCGAGGCATCGAGGCCT
GCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCGCCCAGGCCATGACATGCTCCT
GGCCGTCAAGCAGCAGCAGCAGCGCTTCAGTGACCTGAGGGAACATTTCGCCCGGAGACTGGCCAGCCAT
CTCAACAATGTTTTTGTTCAACAGGGTCATGATCAGAGTTCAACTCTTGCTCAGCACTCTGTTGAACTGA
CTCTACCCAATCACCATCCATTTCATAGAGACTTGCTCCGCTATGCCAAGCTGATGGAGTGGCTAAAGAG
TACAGACTATGGAAAATACGAGGGACTAACAAAGAATTACATGGATTATTTATCCCGACTATATGAAAGA
GAAATCAAAGATTTCTTTGAAGTTGCAAAGATGAAGATGACTGGCACCTCTAAAGAAAGCAAGAAGTTTG
GTCTCCATGGAAGCTCTGGGAAACTCACTGGATCAACTTCTAGTCTGAATAAACTCAGTGTTCAGAGCTC
GGGCAGTCGCAGGTCCCAGTCGTCCTCCCTACTGGACATGGGGAACATGTCTGCCTCTGACCTCGATGTG
GCTGACAGAACCAAGTTTGATAAGATCTTTGAACAGGTGCTGAGTGAACTGGAGCCACTGTGTCTGGCAG
AACAGGACTTCATAAGTAAATTTTTCAAACTACAGCAGCATCAAAACATGTCTGCATCAATGACTGAAGC
AGAAGACCTGGATGGAGGCTCGTTATTACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTTCCTCTGAA
AAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCTAATTG
CATTAGGAGACAAAGTAGATAGCTTTAACTCCCTGTACATGCTGGTCAAAATGAGTCACCACGTGTGGAC
CGCACAGAACGTGGACCCAGCATCTTTTCTAAGTACTACATTAGGAAACGTTTTGGTGACTGTGAAGAGG
AACTTTGACAAATGCATTAGTAACCAAATAAGACAAATGGAAGAAGTAAAGATCTCAAAGAAAAGTAAAG
TAGGAATTCTTCCATTTGTTGCTGAATTTGAAGAATTTGCTGGGCTCGCAGAATCAATTTTCAAAAATGC
TGAACGCCGTGGCGATCTGGACAAAGCATACACCAAATTAATCAGAGGAGTGTTCATTAATGTGGAGAAA
GTAGCAAATGAGAGCCAGAAGACGCCCAGGGATGTGGTCATGATGGAGAACTTTCACCATATTTTTGCAA
CACTTTCTCGTCTGAAAATCTCATGTCTTGAAGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGGATCA
CCTTCAGTCCTACGTCATTTACTCTTTAGGACAGCCCCTTGAAAAGCTAAATCATTTCTTTGAAGGCGTT
GAAGCTCGAGTAGCCCAGGGCATTCGGGAGGAGGAGGTGAGCTACCAGCTTGCGTTCAACAAGCAAGAGC
TTCGCAAAGTCATTAAAGAGTATCCAGGCAAGGAGGTGAAGAAGGGCCTGGACAACCTCTACAAGAAGGT
AGACAAGCACCTGTGTGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGAGTTTATA
CGCCAGTACAAGCACTTCGAGGGGTTGATAGCGCGCTGCTACCCTGGATCTGGAGTTACGATGGAATTCA
CTATTCAGGACATTCTGGATTATTGCTCCAGCATCGCACAGTCCCACTAA

Translation (879 aa):
MTAIKHALQRDIFTPNDERLLSIVNVCKAGKKKKNCFLCATVTTERPVQVKVVKVKKSDKGDFYKRQIAW
ALRDLAVVDAKDAIKENPEFDLHFEKVYKWVASSTAEKNAFISCIWKLNQRYLRKKIDFVNVSSQLLEES
VPSGENQSVAGGDEEAVDEYQELNAREEQDIEIMMEGCECAISNAEAFAEKLSRELQVLDGANIQSIMAS
EKQVNTLMQLLDEALTEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEIEFLVNHM
DLAKGHIKALQEGDLVSSRGIEACTNAADALLQCMNVALRPGHDMLLAVKQQQQRFSDLREHFARRLASH
LNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLKSTDYGKYEGLTKNYMDYLSRLYER
EIKDFFEVAKMKMTGTSKESKKFGLHGSSGKLTGSTSSLNKLSVQSSGSRRSQSSSLLDMGNMSASDLDV
ADRTKFDKIFEQVLSELEPLCLAEQDFISKFFKLQQHQNMSASMTEAEDLDGGSLLRQHSSGTLLPVSSE
KDMIRQMMIKIFRCIEPELNNLIALGDKVDSFNSLYMLVKMSHHVWTAQNVDPASFLSTTLGNVLVTVKR
NFDKCISNQIRQMEEVKISKKSKVGILPFVAEFEEFAGLAESIFKNAERRGDLDKAYTKLIRGVFINVEK
VANESQKTPRDVVMMENFHHIFATLSRLKISCLEAEKKEAKQKYTDHLQSYVIYSLGQPLEKLNHFFEGV
EARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKVDKHLCEEENLLQVVWHSMQDEFI
RQYKHFEGLIARCYPGSGVTMEFTIQDILDYCSSIAQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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