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Report for CCDS71484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71484.1 Public Mus musculus 4 Gpn2 23 108 98 CCDS HistoryNCBI Gene:100210Re-query CCDS DB by CCDS ID:71484.1Re-query CCDS DB by GeneID:100210See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105899.1 ENSMUSP00000101519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105899.1Link to Ensembl Protein Viewer:ENSMUSP00000101519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105899Re-query CCDS DB by Protein ID:ENSMUSP00000101519
Original member Current member NCBI NM_001290742.1 NP_001277671.1 Accepted alive Link to Nucleotide Sequence:NM_001290742.1Link to Protein Sequence:NP_001277671.1Re-query CCDS DB by Nucleotide ID:NM_001290742Re-query CCDS DB by Protein ID:NP_001277671Link to BLAST:NP_001277671.1

Chromosomal Locations for CCDS 71484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133584459 133584800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133585910 133586066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133588500 133588660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133589767 133589897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133591326 133591398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCGGGGGCCGCCCCGACTACGGCCTTCGGGCAGGCAGTGATCGGGCCCCCGGGCTCGGGGAAGACCA
CGTACTGCCTGGGCATGAGTGAGTTCCTGCGCGCTCTGGGGCGGCGCGTGGCGGTGGTGAACCTGGACCC
CGCTAACGACGGACTGCCTTACGAGTGTGCGGTGGACGTGGGCGAGCTGGTGGGGCTGGGCGACGTGATG
GACGCGCTGCGCCTGGGGCCCAACGGTGGCCTGCTCTACTGCATGGAGTACCTGGAAGCCAACCTGGACT
GGCTGCGCGCCAAGCTGGAGCCCCTGCGAGGCCACTACTTTCTCTTCGACTGCCCCGGCCAGCTGACTGC
TGTCCACCTTGTGGATTCTCACTACTGCACAGACCCAGCCAAGTTCATCTCCGTCCTGTGTACCTCCCTG
GCCACCATGCTGCACGTGGAATTGCCCCACATCAACCTCCTCTCCAAGATGGACCTTATTGAACACTATG
GGAAGCTGGCCTTCAACCTGGACTACTACACGGAGGTCCTGGACCTTTCCTACCTGCTTGAGCACCTGGC
GTCTGACCCTTTCTTCCGGCGCTACCGACAGCTCAATGAGAAGCTGGTGCAGCTGGTGGAAGACTACAGC
CTGGTCTCCTTCATCCCCCTGAACATCCAGGACAAGGACAGCATCCAGCGAGTCTTACAGGCTGTGGATA
AAGCTAATGGCTACTGTTTTGGGGTTCAAGAGCAGCGAAGCCTGGAAGCCATGATGTCCGCTGCAATGGG
AGCTGATTTTCACTTCTCCTCCACTCTGGGCATCCAGGAGAAGTACTTAGCACCCTCGGAGCAGACCGCA
GAGCAGGAAGCCATGCAGCTGTGA

Translation (287 aa):
MAGAAPTTAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANDGLPYECAVDVGELVGLGDVM
DALRLGPNGGLLYCMEYLEANLDWLRAKLEPLRGHYFLFDCPGQLTAVHLVDSHYCTDPAKFISVLCTSL
ATMLHVELPHINLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLEHLASDPFFRRYRQLNEKLVQLVEDYS
LVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEAMMSAAMGADFHFSSTLGIQEKYLAPSEQTA
EQEAMQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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