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Report for CCDS71459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71459.1 Public Mus musculus 4 Med8 23 108 98 CCDS HistoryNCBI Gene:80509Re-query CCDS DB by CCDS ID:71459.1Re-query CCDS DB by GeneID:80509See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084319.10 ENSMUSP00000081346.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084319.10Link to Ensembl Protein Viewer:ENSMUSP00000081346.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084319Re-query CCDS DB by Protein ID:ENSMUSP00000081346
Original member Current member NCBI NM_001290688.1 NP_001277617.1 Accepted alive Link to Nucleotide Sequence:NM_001290688.1Link to Protein Sequence:NP_001277617.1Re-query CCDS DB by Nucleotide ID:NM_001290688Re-query CCDS DB by Protein ID:NP_001277617Link to BLAST:NP_001277617.1

Chromosomal Locations for CCDS 71459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118411800 118411802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118412352 118412492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118412664 118412745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118413627 118413875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118414724 118414788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGCGTCAAACTGAAGGACGAGTGCCTGTTTTCAGCCATGAGGTCGTTCCTGACCACTTGAGAACCAAGC
CTGACCCTGAAGTTGAAGAGCAGGAGAAGCAGCTGACAACAGATGCTGCCAGAATTGGTGCTGATGCAGC
TCAGAAGCAGATCCAGAGCTTGAATAAAATGTGCTCAAACCTTTTAGAGAAAATCAGCAAAGAAGAACGA
GAATCAGAGAGCGGAGGTCTCCGGCCAAACAAGCAGACTTTCAACCCTGGAGACACCAATGCCTTAGTAG
CAGCCGTTGCCTTTGGGAAGGGGCTATCTAATTGGCGACCTTCAGGTAGCAGTGGTCCTGGGCAACCCGG
TCAGCCAGGAGCTGGTACAATCCTTGCAGGGGCCTCAGGATTACCGCAGGTTCAGATGCCAGGTGCTCCA
AACCAGCAGCAGCCAATGCTCAGTGGAGTTCAGATGGCTCAGGCAGGTCAACCAGGGAAAATGCCAAGTG
GAATAAAAACCAACATCAAGTCAGCTTCAATGCATCCGTACCAGCGGTGA

Translation (179 aa):
MRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEER
ESESGGLRPNKQTFNPGDTNALVAAVAFGKGLSNWRPSGSSGPGQPGQPGAGTILAGASGLPQVQMPGAP
NQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSASMHPYQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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