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Report for CCDS71296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71296.1 Public Mus musculus 3 Syt6 23 108 98 CCDS HistoryNCBI Gene:54524Re-query CCDS DB by CCDS ID:71296.1Re-query CCDS DB by GeneID:54524See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117221.8 ENSMUSP00000113373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117221.8Link to Ensembl Protein Viewer:ENSMUSP00000113373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117221Re-query CCDS DB by Protein ID:ENSMUSP00000113373
Original member NCBI NM_001276677.2 NP_001263606.1 Updated not alive Link to Nucleotide Sequence:NM_001276677.2Link to Protein Sequence:NP_001263606.1Re-query CCDS DB by Nucleotide ID:NM_001276677Re-query CCDS DB by Protein ID:NP_001263606
Current member NCBI NM_001276677.3 NP_001263606.1 Accepted alive Link to Nucleotide Sequence:NM_001276677.3Link to Protein Sequence:NP_001263606.1Re-query CCDS DB by Nucleotide ID:NM_001276677Re-query CCDS DB by Protein ID:NP_001263606Link to BLAST:NP_001263606.1
Original member NCBI NM_001276679.1 NP_001263608.1 Updated not alive Link to Nucleotide Sequence:NM_001276679.1Link to Protein Sequence:NP_001263608.1Re-query CCDS DB by Nucleotide ID:NM_001276679Re-query CCDS DB by Protein ID:NP_001263608
Current member NCBI NM_001276679.2 NP_001263608.1 Accepted alive Link to Nucleotide Sequence:NM_001276679.2Link to Protein Sequence:NP_001263608.1Re-query CCDS DB by Nucleotide ID:NM_001276679Re-query CCDS DB by Protein ID:NP_001263608Link to BLAST:NP_001263608.1
Original member NCBI NM_001276681.1 NP_001263610.1 Updated not alive Link to Nucleotide Sequence:NM_001276681.1Link to Protein Sequence:NP_001263610.1Re-query CCDS DB by Nucleotide ID:NM_001276681Re-query CCDS DB by Protein ID:NP_001263610
Current member NCBI NM_001276681.2 NP_001263610.1 Accepted alive Link to Nucleotide Sequence:NM_001276681.2Link to Protein Sequence:NP_001263610.1Re-query CCDS DB by Nucleotide ID:NM_001276681Re-query CCDS DB by Protein ID:NP_001263610Link to BLAST:NP_001263610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263606.1 426 Q9R0N8-2 426 100% 0 0
NP_001263608.1 426 Q9R0N8-2 426 100% 0 0
NP_001263610.1 426 Q9R0N8-2 426 100% 0 0

Chromosomal Locations for CCDS 71296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103585434 103585690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103587233 103587794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103620786 103620906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103625497 103625668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103626982 103627132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103630902 103630919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGCCCTGGAGGAAGAAAGAGGCCTCCAGCCCTTCTTCTGCTAACCCTGCTTCAGAGACTCTCCAGAGCC
CCAGCTCCAGAGGCAACATGGCGGATAAGCTGAAGGACCCCAGTGCCCTGGGCTTCCTGGAGGCAGCTGT
GAAGATCAGCCACACTTCCCCAGACATCCCAGCCGAGGTGCAGATGTCGGTCAAAGAGCACATCATGCGC
CACACAAAGCTGCAGCGACAGACCACAGAGCCAGCATCCTCCACCAGGCACACATCCTTCAAGCGCCACC
TGCCACGACAGATGCATGTCTCCAGCGTGGACTATGGCAATGAGCTGCCGCCGGCTGCCGCCGAGCAGCC
CACCAGTATTGGCCGTATCAAGCCTGAGCTTTACAAGCAGAAGTCAGTGGATGGGGATGATGCCAAGTCG
GAGGCCGCCAAGAGCTGTGGGAAGATCAACTTCAGCCTCCGCTATGACTATGAAAGCGAGACGCTGATTG
TGCGCATCCTGAAGGCCTTTGACCTCCCTGCCAAGGACTTTTGCGGAAGTTCTGACCCTTATGTTAAGAT
CTACCTCCTGCCTGACCGCAAGTGCAAGCTGCAGACCCGGGTGCACCGCAAGACCCTGAACCCCACCTTT
GATGAGAACTTCCACTTCCCCGTGCCCTACGAGGAGCTGGCTGACCGCAAGCTGCATCTCAGTGTCTTTG
ACTTTGACCGCTTCTCCCGCCATGACATGATTGGGGAGGTCATCCTGGACAATCTCTTTGAGGCCTCTGA
CCTGTCCCGGGAGACCTCCATCTGGAAGGACATCCAGTACGCTACTAGTGAAAGTGTGGACTTGGGAGAG
ATCATGTTCTCCCTCTGCTACCTGCCCACAGCAGGCAGGCTCACCCTCACAGTGATCAAGTGTCGAAATC
TCAAAGCAATGGACATCACAGGCTACTCAGATCCCTACGTCAAAGTATCCCTACTGTGTGATGGACGGAG
GCTGAAAAAGAAGAAAACGACCATAAAAAAGAACACCCTAAACCCCATCTACAACGAGGCCATCATCTTT
GACATCCCCCCAGAAAACATGGACCAAGTGAGCCTGCTCATCTCCGTTATGGACTATGATAGAGTTGGCC
ACAACGAGATCATAGGAGTCTGTAGAGTGGGGATCAATGCTGAAGGCCTTGGCAGGGACCACTGGAATGA
GATGTTGGCGTACCCACGAAAGCCCATTGCGCACTGGCACTCCTTGGTGGAGGTAAAGAAATCCTTCAAA
GAGGGGACCCCTCGGTTGTGA

Translation (426 aa):
MPWRKKEASSPSSANPASETLQSPSSRGNMADKLKDPSALGFLEAAVKISHTSPDIPAEVQMSVKEHIMR
HTKLQRQTTEPASSTRHTSFKRHLPRQMHVSSVDYGNELPPAAAEQPTSIGRIKPELYKQKSVDGDDAKS
EAAKSCGKINFSLRYDYESETLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDRKCKLQTRVHRKTLNPTF
DENFHFPVPYEELADRKLHLSVFDFDRFSRHDMIGEVILDNLFEASDLSRETSIWKDIQYATSESVDLGE
IMFSLCYLPTAGRLTLTVIKCRNLKAMDITGYSDPYVKVSLLCDGRRLKKKKTTIKKNTLNPIYNEAIIF
DIPPENMDQVSLLISVMDYDRVGHNEIIGVCRVGINAEGLGRDHWNEMLAYPRKPIAHWHSLVEVKKSFK
EGTPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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