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Report for CCDS71157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71157.1 Public Mus musculus 2 Foxa2 23 108 98 CCDS HistoryNCBI Gene:15376Re-query CCDS DB by CCDS ID:71157.1Re-query CCDS DB by GeneID:15376See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109964.7 ENSMUSP00000105590.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109964.7Link to Ensembl Protein Viewer:ENSMUSP00000105590.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109964Re-query CCDS DB by Protein ID:ENSMUSP00000105590
Original member Current member NCBI NM_001291065.1 NP_001277994.1 Accepted alive Link to Nucleotide Sequence:NM_001291065.1Link to Protein Sequence:NP_001277994.1Re-query CCDS DB by Nucleotide ID:NM_001291065Re-query CCDS DB by Protein ID:NP_001277994Link to BLAST:NP_001277994.1

Chromosomal Locations for CCDS 71157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148043514 148044824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148045827 148045913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCACTCGGCTTCCAGTATGCTGGGAGCCGTGAAGATGGAAGGGCACGAGCCATCCGACTGGAGCAGCT
ACTACGCGGAGCCCGAGGGCTACTCTTCCGTGAGCAACATGAACGCCGGCCTGGGGATGAATGGCATGAA
CACATACATGAGCATGTCCGCGGCTGCCATGGGCGGCGGTTCCGGCAACATGAGCGCGGGCTCCATGAAC
ATGTCATCCTATGTGGGCGCTGGAATGAGCCCGTCGCTAGCTGGCATGTCCCCGGGCGCCGGCGCCATGG
CGGGCATGAGCGGCTCAGCCGGGGCGGCCGGCGTGGCGGGCATGGGACCTCACCTGAGTCCGAGTCTGAG
CCCGCTCGGGGGACAGGCGGCCGGGGCCATGGGTGGCCTTGCCCCCTACGCCAACATGAACTCGATGAGC
CCCATGTACGGGCAGGCCGGCCTGAGCCGCGCTCGGGACCCCAAGACATACCGACGCAGCTACACACACG
CCAAACCTCCCTACTCGTACATCTCGCTCATCACCATGGCCATCCAGCAGAGCCCCAACAAGATGCTGAC
GCTGAGCGAGATCTATCAGTGGATCATGGACCTCTTCCCTTTCTACCGGCAGAACCAGCAGCGCTGGCAG
AACTCCATCCGCCACTCTCTCTCCTTCAACGACTGCTTTCTCAAGGTGCCCCGCTCGCCAGACAAGCCTG
GCAAGGGCTCCTTCTGGACCCTGCACCCAGACTCGGGCAACATGTTCGAGAACGGCTGCTACCTGCGCCG
CCAGAAGCGCTTCAAGTGTGAGAAGCAACTGGCACTGAAGGAAGCCGCGGGTGCGGCCAGTAGCGGAGGC
AAGAAGACCGCTCCTGGGTCCCAGGCCTCTCAGGCTCAGCTCGGGGAGGCCGCGGGCTCGGCCTCCGAGA
CTCCGGCGGGCACCGAGTCCCCCCATTCCAGCGCTTCTCCGTGTCAGGAGCACAAGCGAGGTGGCCTAAG
CGAGCTAAAGGGAGCACCTGCCTCTGCGCTGAGTCCTCCCGAGCCGGCGCCCTCGCCTGGGCAGCAGCAG
CAGGCTGCAGCCCACCTGCTGGGCCCACCTCACCACCCAGGCCTGCCACCAGAGGCCCACCTGAAGCCCG
AGCACCATTACGCCTTCAACCACCCCTTCTCTATCAACAACCTCATGTCGTCCGAGCAGCAACATCACCA
CAGCCACCACCACCATCAGCCCCACAAAATGGACCTCAAGGCCTACGAACAGGTCATGCACTACCCAGGG
GGCTATGGTTCCCCCATGCCAGGCAGCTTGGCCATGGGCCCAGTCACGAACAAAGCGGGCCTGGATGCCT
CGCCCCTGGCTGCAGACACTTCCTACTACCAAGGAGTGTACTCCAGGCCTATTATGAACTCATCCTAA

Translation (465 aa):
MHSASSMLGAVKMEGHEPSDWSSYYAEPEGYSSVSNMNAGLGMNGMNTYMSMSAAAMGGGSGNMSAGSMN
MSSYVGAGMSPSLAGMSPGAGAMAGMSGSAGAAGVAGMGPHLSPSLSPLGGQAAGAMGGLAPYANMNSMS
PMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQ
NSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQLALKEAAGAASSGG
KKTAPGSQASQAQLGEAAGSASETPAGTESPHSSASPCQEHKRGGLSELKGAPASALSPPEPAPSPGQQQ
QAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVMHYPG
GYGSPMPGSLAMGPVTNKAGLDASPLAADTSYYQGVYSRPIMNSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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