NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71151.1 Public Mus musculus 2 Gpcpd1 23 108 98 CCDS HistoryNCBI Gene:74182Re-query CCDS DB by CCDS ID:71151.1Re-query CCDS DB by GeneID:74182See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110136.7 ENSMUSP00000105763.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110136.7Link to Ensembl Protein Viewer:ENSMUSP00000105763.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110136Re-query CCDS DB by Protein ID:ENSMUSP00000105763
Original member Current member NCBI NM_001291050.1 NP_001277979.1 Accepted alive Link to Nucleotide Sequence:NM_001291050.1Link to Protein Sequence:NP_001277979.1Re-query CCDS DB by Nucleotide ID:NM_001291050Re-query CCDS DB by Protein ID:NP_001277979Link to BLAST:NP_001277979.1
Original member Current member NCBI NM_001291051.1 NP_001277980.1 Accepted alive Link to Nucleotide Sequence:NM_001291051.1Link to Protein Sequence:NP_001277980.1Re-query CCDS DB by Nucleotide ID:NM_001291051Re-query CCDS DB by Protein ID:NP_001277980Link to BLAST:NP_001277980.1
Original member Current member NCBI NM_001291052.1 NP_001277981.1 Accepted alive Link to Nucleotide Sequence:NM_001291052.1Link to Protein Sequence:NP_001277981.1Re-query CCDS DB by Nucleotide ID:NM_001291052Re-query CCDS DB by Protein ID:NP_001277981Link to BLAST:NP_001277981.1
Original member Current member NCBI NM_001355648.1 NP_001342577.1 Accepted alive Link to Nucleotide Sequence:NM_001355648.1Link to Protein Sequence:NP_001342577.1Re-query CCDS DB by Nucleotide ID:NM_001355648Re-query CCDS DB by Protein ID:NP_001342577Link to BLAST:NP_001342577.1
Original member Current member NCBI NM_027096.2 NP_081372.1 Accepted alive Link to Nucleotide Sequence:NM_027096.2Link to Protein Sequence:NP_081372.1Re-query CCDS DB by Nucleotide ID:NM_027096Re-query CCDS DB by Protein ID:NP_081372Link to BLAST:NP_081372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277979.1 491 Q8C0L9-2 491 100% 0 0
NP_001277980.1 491 Q8C0L9-2 491 100% 0 0
NP_001277981.1 491 Q8C0L9-2 491 100% 0 0
NP_001342577.1 491 Q8C0L9-2 491 100% 0 0
NP_081372.1 491 Q8C0L9-2 491 100% 0 0

Chromosomal Locations for CCDS 71151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132530553 132530742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132534074 132534234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132534698 132534833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132535362 132535498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132536685 132536750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132538082 132538143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132539899 132539938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132540285 132540362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132542243 132542335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132544392 132544446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132546841 132546973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132547557 132547719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132550314 132550475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGTCCAACAGCCTGGAGATATCCTTAATAAGTGACAATGAGTTCAAGTGCAGGCACTCACAGCCAGAAT
GTGGGTATGGCTTACAGCCCGATCGTTGGACAGAGTACAGCATACAGACAATGGAACCAGATAATCTGGA
GCTCATCTTTGACTTTTTTGAGGAAGATCTCAGTGAGCATGTAGTTCAGGGTGATGTTCTTCCTGGACAC
GTGGGCACAGCATGCCTCCTGTCTTCTACCATTGCTGAGAGTGGAAGAAGCGCTGGAATCCTTACTCTTC
CCATCATGAGCAGAAATTCCAGAAAAACTATAGGCAAAGTCAGAGTTGATTTTATCATCATCAAGCCATT
ACCTGGATATAGTTGTTCTATGCAGTCTTCATTTTCCAAGTATTGGAAACCAAGAATACCATTGGACGTT
GGACATCGTGGTGCAGGGAACTCAACAACGACTGCCAAGCTAGCTAAAGTACAGGAAAATACTATCGCTT
CTTTAAGAAATGCTGCCAGTCATGGCGCAGCATTTGTAGAATTTGATGTCCACCTTTCAAAGGACTTTGT
GCCCGTGGTGTATCATGACCTCACCTGCTGTCTGACCATGAAGAGGAAATATGAAGCTGATCCAGTTGAA
TTGTTTGAAATCCCAGTAAAAGAATTAACATTTGACCAACTCCAGTTATTGAAGCTTTCTCATGTGACTG
CATTAAAAACCAAAGACCGGAAACAATCTTTGTATGAGGAGGAAAATTTCTTTTCTGAAAATCAGCCATT
TCCTTCTCTTAAGATGGTTTTAGAATCATTGCCAGAAAATGTAGGATTTAATATAGAAATAAAATGGATT
TGCCAACACAGGGATGGAGTATGGGATGGCAACTTATCAACATATTTTGATATGAATGTGTTTTTGGATA
TAATTTTAAAAACTGTTTTAGAAAATTCTGGGAAGAGGAGAATAGTGTTTTCTTCTTTTGATGCAGATAT
TTGTACAATGGTTCGGCAGAAGCAGAACAAATATCCCATATTATTTTTGACCCAAGGAAAGTCTGATATT
TACCCCGAACTCATGGACCTCAGATCTCGGACAACACCCATTGCAATGAGTTTTGCACAGTTTGAAAATA
TTTTGGGGATAAATGCCCATACTGAAGACCTCCTTAGAAACCCATCCTATGTCCAAGAGGCAAAAGCTAA
GGGATTGGTCATATTCTGCTGGGGTGATGATACCAACGATCCTGAAAACAGAAGGAAACTGAAGGAATTT
GGAGTAAATGGTCTAATATATGATAGGATATATGATTGGATGCCTGAACAGCCAAATATATTCCAAGTGG
AGCAGTTGGAGCGCCTGAAGCAAGAATTGCCAGAGCTTAAGAACTGTTTGTGTCCCACTGTTAGCCACTT
CATCCCTTCTTCTTTCTGTGTGGAGCCTGATATCCACGTGGATGCCAACGGCATTGATAGTGTGGAGAAC
GCTTAG

Translation (491 aa):
MSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSEHVVQGDVLPGH
VGTACLLSSTIAESGRSAGILTLPIMSRNSRKTIGKVRVDFIIIKPLPGYSCSMQSSFSKYWKPRIPLDV
GHRGAGNSTTTAKLAKVQENTIASLRNAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKRKYEADPVE
LFEIPVKELTFDQLQLLKLSHVTALKTKDRKQSLYEEENFFSENQPFPSLKMVLESLPENVGFNIEIKWI
CQHRDGVWDGNLSTYFDMNVFLDIILKTVLENSGKRRIVFSSFDADICTMVRQKQNKYPILFLTQGKSDI
YPELMDLRSRTTPIAMSFAQFENILGINAHTEDLLRNPSYVQEAKAKGLVIFCWGDDTNDPENRRKLKEF
GVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKNCLCPTVSHFIPSSFCVEPDIHVDANGIDSVEN
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH