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Report for CCDS70977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70977.1 Public Mus musculus 2 Il15ra 23 108 98 CCDS HistoryNCBI Gene:16169Re-query CCDS DB by CCDS ID:70977.1Re-query CCDS DB by GeneID:16169See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70977.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114831.8 ENSMUSP00000110480.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114831.8Link to Ensembl Protein Viewer:ENSMUSP00000110480.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114831Re-query CCDS DB by Protein ID:ENSMUSP00000110480
Original member NCBI NM_001271499.1 NP_001258428.1 Updated not alive Link to Nucleotide Sequence:NM_001271499.1Link to Protein Sequence:NP_001258428.1Re-query CCDS DB by Nucleotide ID:NM_001271499Re-query CCDS DB by Protein ID:NP_001258428
Current member NCBI NM_001271499.2 NP_001258428.1 Accepted alive Link to Nucleotide Sequence:NM_001271499.2Link to Protein Sequence:NP_001258428.1Re-query CCDS DB by Nucleotide ID:NM_001271499Re-query CCDS DB by Protein ID:NP_001258428Link to BLAST:NP_001258428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258428.1 230 Q60819-2 230 100% 0 0

Chromosomal Locations for CCDS 70977.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11705848 11705944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11718264 11718458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11720013 11720105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11723512 11723610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11724096 11724128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11730571 11730646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11733150 11733249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGCCTCGCCGCAGCTCCGGGGCTATGGAGTCCAGGCCATTCCTGTGTTGCTGCTGCTGCTGTTGCTAC
TGTTGCTCCCGCTGAGGGTGACGCCGGGCACCACGTGTCCACCTCCCGTATCTATTGAGCATGCTGACAT
CCGGGTCAAGAATTACAGTGTGAACTCCAGGGAGAGGTATGTCTGTAACTCTGGCTTTAAGCGGAAAGCT
GGAACATCCACCCTGATTGAGTGTGTGATCAACAAGAACACAAATGTTGCCCACTGGACAACTCCCAGCC
TCAAGTGCATCAGAGACCCCTCCCTAGCTCACTACAGTCCAGTGCCAACAGTAGTGACACCAAAGGTGAC
CTCACAGCCAGAGAGCCCCTCCCCCTCTGCAAAAGGAACTACAGGGACAGGCAGTCACAAGTCCTCCCGA
GCCCCATCTCTTGCAGCAACAATGACCTTGGAGCCTACAGCCTCCACCTCCCTCAGGATAACAGAGATTT
CTCCCCACAGTTCCAAAATGACGAAAGTGGCCATCTCTACATCGGTCCTCTTGGTTGGTGCAGGGGTTGT
GATGGCTTTCCTGGCCTGGTACATCAAATCAAGGCAGCCTTCTCAGCCGTGCCGTGTTGAGGTGGAAACC
ATGGAAACAGTACCAATGACTGTGAGGGCCAGCAGCAAGGAGGATGAAGACACAGGAGCCTAA

Translation (230 aa):
MASPQLRGYGVQAIPVLLLLLLLLLLPLRVTPGTTCPPPVSIEHADIRVKNYSVNSRERYVCNSGFKRKA
GTSTLIECVINKNTNVAHWTTPSLKCIRDPSLAHYSPVPTVVTPKVTSQPESPSPSAKGTTGTGSHKSSR
APSLAATMTLEPTASTSLRITEISPHSSKMTKVAISTSVLLVGAGVVMAFLAWYIKSRQPSQPCRVEVET
METVPMTVRASSKEDEDTGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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