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Report for CCDS70646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70646.1 Public Mus musculus 15 Csnk1e 23 108 98 CCDS HistoryNCBI Gene:27373Re-query CCDS DB by CCDS ID:70646.1Re-query CCDS DB by GeneID:27373See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122044.7 ENSMUSP00000113096.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122044.7Link to Ensembl Protein Viewer:ENSMUSP00000113096.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122044Re-query CCDS DB by Protein ID:ENSMUSP00000113096
Original member NCBI NM_001289899.1 NP_001276828.1 Updated not alive Link to Nucleotide Sequence:NM_001289899.1Link to Protein Sequence:NP_001276828.1Re-query CCDS DB by Nucleotide ID:NM_001289899Re-query CCDS DB by Protein ID:NP_001276828
Current member NCBI NM_001289899.2 NP_001276828.1 Accepted alive Link to Nucleotide Sequence:NM_001289899.2Link to Protein Sequence:NP_001276828.1Re-query CCDS DB by Nucleotide ID:NM_001289899Re-query CCDS DB by Protein ID:NP_001276828Link to BLAST:NP_001276828.1

Chromosomal Locations for CCDS 70646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79423938 79424055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79424152 79424255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79424840 79424988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79425500 79425670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79426259 79426487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79429712 79429860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79430055 79430165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79438772 79438847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGAGTTGCGTGTGGGAAATAAGTATCGCCTGGGCCGAAAGATCGGCAGTGGCTCCTTTGGAGACATCT
ACCTGGGTGCCAACATTGCCTCTGGTGAGGAAGTAGCCATCAAGCTCGAATGTGTGAAGACGAAACATCC
CCAGCTCCACATCGAGAGCAAGTTCTACAAGATGATGCAGGGCGGAGTGGGGATCCCGTCCATCAAGTGG
TGCGGGGCTGAGGGAGACTATAACGTGATGGTCATGGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCA
ACTTCTGTTCCCGGAAGTTCAGCCTCAAGACGGTGCTGTTGCTGGCCGACCAGATGATCAGCCGCATCGA
GTACATACACTCCAAGAACTTCATCCACCGGGATGTGAAGCCCGACAACTTCCTCATGGGCCTGGGGAAG
AAAGGCAACCTGGTGTACATCATTGACTTCGGCCTGGCCAAGAAGTACCGCGATGCCCGCACACACCAGC
ATATTCCCTACCGGGAAAACAAGAACCTGACCGGCACTGCCCGCTATGCCTCTATCAACACCCACCTGGG
CATTGAGCAAAGCCGTCGAGATGACCTAGAGAGCTTGGGCTATGTGCTCATGTACTTCAACCTGGGCTCC
CTGCCCTGGCAGGGCCTCAAAGCAGCCACCAAGCGTCAGAAGTACGAGCGGATTAGCGAGAAGAAGATGT
CAACGCCAATCGAGGTCCTCTGCAAAGGCTACCCCTCCGAGTTCTCAACATACCTCAACTTCTGCCGCTC
CCTGCGGTTCGATGATAAGCCTGACTACTCCTACCTGCGCCAGCTCTTCCGAAATCTCTTTCACCGGCAG
GGTTTCTCCTACGACTACGTCTTCGACTGGAACATGCTCAAATTCGGGGCTTCCTCGAGCCAGGCTCAGC
CCCGAGACAACGAAGCTCTTGCGCCACCCTGCCCCCGCCCTTGGCCTTGCGCTGGGCCCGCATACTCACC
CACTTACTGGTGCCCGGCGCCCCTGGGCACCCAAGGACCCCCAGATAGGCCGGTGGAGGAGGAGGTGGAA
CAACTGCCCCCTCAAAGATATTGGCCTGTGGTCTGGACTCCAGGGCCCCAGTTCTGA

Translation (368 aa):
MELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKW
CGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGK
KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS
LPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ
GFSYDYVFDWNMLKFGASSSQAQPRDNEALAPPCPRPWPCAGPAYSPTYWCPAPLGTQGPPDRPVEEEVE
QLPPQRYWPVVWTPGPQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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