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Report for CCDS70243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70243.1 Public Mus musculus 11 Rph3al 23 108 98 CCDS HistoryNCBI Gene:380714Re-query CCDS DB by CCDS ID:70243.1Re-query CCDS DB by GeneID:380714See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021208.10 ENSMUSP00000021208.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021208.10Link to Ensembl Protein Viewer:ENSMUSP00000021208.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021208Re-query CCDS DB by Protein ID:ENSMUSP00000021208
Original member Current member EBI ENSMUST00000108420.8 ENSMUSP00000104058.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108420.8Link to Ensembl Protein Viewer:ENSMUSP00000104058.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108420Re-query CCDS DB by Protein ID:ENSMUSP00000104058
Original member Current member NCBI NM_001291159.1 NP_001278088.1 Accepted alive Link to Nucleotide Sequence:NM_001291159.1Link to Protein Sequence:NP_001278088.1Re-query CCDS DB by Nucleotide ID:NM_001291159Re-query CCDS DB by Protein ID:NP_001278088Link to BLAST:NP_001278088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278088.1 141 Q768S4-2 141 100% 0 0

Chromosomal Locations for CCDS 70243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75900819 75900893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75906518 75906647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75908911 75909054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75910950 75911026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGCTGACACCATCTTCAGCAGTGGAAATGATCAGTGGGTTTGCCCCAACGATCGGCAGCTTGCTCTGA
GAGCCAAGCTGCAGACGGGCTGGTCTGTGCACACGTACCAGACGGAGAAGCAGAGGAGGAGCCAGTGCCT
GAGCCCCGGAGAGCTGGAGATCATCCTTCAGGTCATCCAGAGAGCAGAGAGGCTAGACATCCTGGAGCAG
CAGAGAATTGGGCGGCTGGTGGAGCGGCTGGAGACAATGCAGAGGAACGTGATGGGCAACGGTCTCTCCC
AGTGTCTGCTCTGCGGGGAGGTGCTGGGATTCCTGGGCAGCTCCTCCGTATTCTGCAAAGACTGCAGGAA
GCTTGGGATCCGCTGGCTGCAGCACTTCCTAGAAAGCCTGCTGATTCTGAACAGAGATCTCACGTGCTCC
TTGTGA

Translation (141 aa):
MADTIFSSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRSQCLSPGELEIILQVIQRAERLDILEQ
QRIGRLVERLETMQRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKLGIRWLQHFLESLLILNRDLTCS
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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